Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0649 ATGTCATTCCGTAGCATAATTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGTGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCGCAGCCGCCTCCTCAGCCGGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 47.04 MSFRSIIRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19438036 19440544 + CrPI670011_08g006490.1 Cre08g0649 505567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0649 432 CDD F-box_AtTLP-like 53 97 - -
Cre08g0649 432 Pfam Tub family 114 427 IPR000007 -
Cre08g0649 432 Gene3D - 48 103 - -
Cre08g0649 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cre08g0649 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cre08g0649 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Cre08g0649 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cre08g0649 432 FunFam Tubby-like F-box protein 110 432 - -
Cre08g0649 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cre08g0649 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cre08g0649 432 MobiDBLite consensus disorder prediction 368 388 - -
Cre08g0649 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cre08g0649 432 PANTHER TUBBY-RELATED 39 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0649 K19600 - - csv:101203074 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0707 Cre-Chr5:6252309 Cre08g0649 Cre-Chr8:19438036 2.50E-121 dispersed
Cre07g1208 Cre-Chr7:25326144 Cre08g0649 Cre-Chr8:19438036 2.30E-13 dispersed
Cre07g1395 Cre-Chr7:28848010 Cre08g0649 Cre-Chr8:19438036 4.50E-96 dispersed
Cre08g0325 Cre-Chr8:10012404 Cre08g0649 Cre-Chr8:19438036 1.20E-201 dispersed
Cre08g0649 Cre-Chr8:19438036 Cre09g0327 Cre-Chr9:3193308 2.00E-10 dispersed
Cre08g0649 Cre-Chr8:19438036 Cre05g2058 Cre-Chr5:32570904 1.50E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0325 . 1 431 TUB Transcription Factor Family AT1G76900 73.0 8.9e-179 623.6
Cre08g0649 . 1 432 TUB Transcription Factor Family AT1G76900 69.6 8.3e-169 590.5
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.1e-168 590.1
Cre05g0707 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.6e-111 400.2
Cre05g1169 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.8e-102 367.1
Cre08g0325 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 5.2e-94 341.3
Cre08g0649 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 2.6e-93 339.0
Cre05g0707 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 5.2e-70 261.5
Cre05g2058 . 295 522 TUB Transcription Factor Family AT1G25280 53.8 1.6e-66 250.0
Cre04g1574 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 7.3e-64 241.1
Cre06g1299 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.6e-53 206.1
Cre05g0707 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 2.1e-96 349.4
Cre06g1299 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.5e-86 316.6
Cre08g0325 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 4.1e-84 308.5
Cre08g0649 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.6e-83 306.6
Cre05g1169 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 3.9e-82 302.0
Cre05g2058 . 231 522 TUB Transcription Factor Family AT5G18680 51.9 3.7e-77 285.4
Cre07g1395 . 117 383 TUB Transcription Factor Family AT5G18680 51.0 2.1e-67 253.1
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.3e-138 490.0
Cre05g2058 . 117 522 TUB Transcription Factor Family AT2G18280 59.0 4.9e-125 444.9
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 1.5e-118 423.3
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 3.2e-116 415.6
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 4.2e-116 415.2
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G18280 50.9 9.6e-113 404.1
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 7.1e-100 361.3
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G18280 52.3 1.2e-94 344.0
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 5.7e-161 564.3
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.3e-146 515.8
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.5e-132 469.9
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 1.4e-130 463.4
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 4.0e-130 461.8
Cre05g2058 . 126 522 TUB Transcription Factor Family AT2G47900 55.4 5.1e-117 418.3
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.0e-114 408.7
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G47900 51.8 3.6e-99 359.0
Cre09g0327 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 5.5e-73 271.6
Cre08g0325 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cre05g1169 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 4.6e-146 514.6
Cre08g0649 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 2.0e-141 499.2
Cre05g0707 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.4e-105 380.2
Cre05g2058 . 184 522 TUB Transcription Factor Family AT1G43640 50.1 2.5e-99 359.4
Cre06g1299 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.7e-93 339.3
Cre05g2058 . 150 522 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cre04g1574 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 2.5e-121 432.6
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 5.0e-114 408.3
Cre08g0325 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.7e-112 402.5
Cre08g0649 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.7e-112 402.5
Cre05g0707 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.7e-104 375.9
Cre07g1395 . 1 383 TUB Transcription Factor Family AT1G53320 70.0 1.1e-153 540.0
Cre05g0707 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.1e-97 351.7
Cre06g1299 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.9e-82 301.6
Cre05g1169 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 1.9e-81 299.7
Cre08g0649 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 5.4e-81 298.1
Cre08g0325 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.6e-80 295.0
Cre05g2058 . 235 522 TUB Transcription Factor Family AT3G06380 52.9 3.9e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54156 PF01167 Tub 1.10E-115 CL0395 Cre TF