Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0649 | ATGTCATTCCGTAGCATAATTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGTGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCGCAGCCGCCTCCTCAGCCGGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG | 1299 | 47.04 | MSFRSIIRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19438036 | 19440544 | + | CrPI670011_08g006490.1 | Cre08g0649 | 505567 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0649 | 432 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Cre08g0649 | 432 | Pfam | Tub family | 114 | 427 | IPR000007 | - | |
Cre08g0649 | 432 | Gene3D | - | 48 | 103 | - | - | |
Cre08g0649 | 432 | ProSitePatterns | Tub family signature 2. | 417 | 432 | IPR018066 | - | |
Cre08g0649 | 432 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515(InterPro) | |
Cre08g0649 | 432 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 432 | IPR025659 | - | |
Cre08g0649 | 432 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Cre08g0649 | 432 | FunFam | Tubby-like F-box protein | 110 | 432 | - | - | |
Cre08g0649 | 432 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Cre08g0649 | 432 | Gene3D | Tubby Protein; Chain A | 113 | 426 | IPR025659 | - | |
Cre08g0649 | 432 | MobiDBLite | consensus disorder prediction | 368 | 388 | - | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 389 | 408 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 410 | 432 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Cre08g0649 | 432 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Cre08g0649 | 432 | PANTHER | TUBBY-RELATED | 39 | 431 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0707 | Cre-Chr5:6252309 | Cre08g0649 | Cre-Chr8:19438036 | 2.50E-121 | dispersed | |
Cre07g1208 | Cre-Chr7:25326144 | Cre08g0649 | Cre-Chr8:19438036 | 2.30E-13 | dispersed | |
Cre07g1395 | Cre-Chr7:28848010 | Cre08g0649 | Cre-Chr8:19438036 | 4.50E-96 | dispersed | |
Cre08g0325 | Cre-Chr8:10012404 | Cre08g0649 | Cre-Chr8:19438036 | 1.20E-201 | dispersed | |
Cre08g0649 | Cre-Chr8:19438036 | Cre09g0327 | Cre-Chr9:3193308 | 2.00E-10 | dispersed | |
Cre08g0649 | Cre-Chr8:19438036 | Cre05g2058 | Cre-Chr5:32570904 | 1.50E-119 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54156 | PF01167 | Tub | 1.10E-115 | CL0395 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0649 | K19600 | - | csv:101203074 | 853.203 |