Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0649 ATGTCATTCCGTAGCATAATTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGTGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCGCAGCCGCCTCCTCAGCCGGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 47.04 MSFRSIIRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19438036 19440544 + CrPI670011_08g006490.1 Cre08g0649 505567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0649 432 CDD F-box_AtTLP-like 53 97 - -
Cre08g0649 432 Pfam Tub family 114 427 IPR000007 -
Cre08g0649 432 Gene3D - 48 103 - -
Cre08g0649 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cre08g0649 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cre08g0649 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Cre08g0649 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cre08g0649 432 FunFam Tubby-like F-box protein 110 432 - -
Cre08g0649 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cre08g0649 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cre08g0649 432 MobiDBLite consensus disorder prediction 368 388 - -
Cre08g0649 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cre08g0649 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cre08g0649 432 PANTHER TUBBY-RELATED 39 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0707 Cre-Chr5:6252309 Cre08g0649 Cre-Chr8:19438036 2.50E-121 dispersed
Cre07g1208 Cre-Chr7:25326144 Cre08g0649 Cre-Chr8:19438036 2.30E-13 dispersed
Cre07g1395 Cre-Chr7:28848010 Cre08g0649 Cre-Chr8:19438036 4.50E-96 dispersed
Cre08g0325 Cre-Chr8:10012404 Cre08g0649 Cre-Chr8:19438036 1.20E-201 dispersed
Cre08g0649 Cre-Chr8:19438036 Cre09g0327 Cre-Chr9:3193308 2.00E-10 dispersed
Cre08g0649 Cre-Chr8:19438036 Cre05g2058 Cre-Chr5:32570904 1.50E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54156 PF01167 Tub 1.10E-115 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0649 K19600 - csv:101203074 853.203