Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0653 ATGGCATCATCCAAGCTCTTCCCATCTTCCAATTCGCGAAATTCGGATCTATCTCGAGGTTCTTCTTCTTCTTCTTCCTCTTCTGCTTCTCTTTTAAAACCCCAATTTTTCTCCAATCGCGCCAGAAATTATGACAACCCATCTCGCAATCGACCCCATACTCTTACCTCAATGACCGTCGACGGCTTACTTCGTAATGGCTACGATTCCAATCCCACGGAATCGTCTATTCTCTTAGATGCACAGATTACTCTTGTTGATTCCCCTAACCCCTCTTCGCTTCCCATGAATACCACCACCACTACCACCACTAATTCCTCTGCTGTCATTGATAGTAACCACAATTCTTCCTCTGGTGCGCCGCCGCCCAAAACTGTGGATGATGTGTGGAGGGAGATTGTTTCTGGTGAGAGGAAGGAATTGAAGGAGGAGGTTGCTGACGAGATGATAACCCTCGAGGATTTTCTTTTGAAATCTGGAGCTGTGCCTGTTGAGGATGTTAAATTGCCGCAGACAGAGAGGCTGAGTGGAGGGGTTTTTTCGTTTGATCCAATTCCTTCCACTACATTTCAGGCATTGGATAAGGTTGAAGGATCCATTATTGGGTTTGCTAATGGGGTTGATTTGATTGGAAGTGGTGGAAGTGGGGGCAGAGGTAAAAGAGGGCGAGCTGCTTTGGAACCTTTAGATAAGGCTGCAGAGCAAAGACAGAGGAGGATGATCAAGAACAGGGAGTCTGCAGCAAGGTCTAGGGAACGGAAGCAGGCTTATCAAGTGGAATTAGAGTCGTTAGCTGTAAGATTAGAGGAGGAGAATGAGCGGCTTTTGAGGGAAAAGGCTGAGAGGACTAAAGAGAGGTTCAAGCAGTTAATGGAAAAGGTGATTCCTGTTGTTGAAAAGCGACGACCCCCACGAGTCATCCGGCGAGTTAATTCAATGAAATGGTGA 948 46.62 MASSKLFPSSNSRNSDLSRGSSSSSSSSASLLKPQFFSNRARNYDNPSRNRPHTLTSMTVDGLLRNGYDSNPTESSILLDAQITLVDSPNPSSLPMNTTTTTTTNSSAVIDSNHNSSSGAPPPKTVDDVWREIVSGERKELKEEVADEMITLEDFLLKSGAVPVEDVKLPQTERLSGGVFSFDPIPSTTFQALDKVEGSIIGFANGVDLIGSGGSGGRGKRGRAALEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENERLLREKAERTKERFKQLMEKVIPVVEKRRPPRVIRRVNSMKW 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19476511 19480648 + CrPI670011_08g006530.1 Cre08g0653 505571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0653 315 Coils Coil 254 293 - -
Cre08g0653 315 MobiDBLite consensus disorder prediction 89 126 - -
Cre08g0653 315 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 51 289 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cre08g0653 315 SMART brlzneu 231 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0653 315 CDD bZIP_plant_BZIP46 235 262 - -
Cre08g0653 315 MobiDBLite consensus disorder prediction 89 122 - -
Cre08g0653 315 Gene3D - 233 294 - -
Cre08g0653 315 MobiDBLite consensus disorder prediction 1 56 - -
Cre08g0653 315 Pfam bZIP transcription factor 233 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0653 315 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 238 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0653 315 SUPERFAMILY Leucine zipper domain 236 286 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0653 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 233 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0653 315 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 233 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0653 Cre-Chr8:19476511 Cre09g0962 Cre-Chr9:9868043 1.40E-34 dispersed
Cre08g0653 Cre-Chr8:19476511 Cre02g2524 Cre-Chr2:38532586 4.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54157 PF00170 bZIP_1 9.70E-12 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0653 K14432 - csv:101223110 469.929