Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0666 | ATGGCGGCTACAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCGACGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACTCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAAAGTGGTTATGGAAATGTTTTTATCAAAAATCTAGATACATCCATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAAGTGAGGAGTCGGCTGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGACACCAAGAAAGGATTCGAGCAAATGGGTCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACCAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCGGTTGCCCAGCGCAAAGAAGAAAGAAAGGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCCGGAATGGCAGGATTTCATCCTGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTGCCGGATATGGCTTCCAACCTCAACTCATGAGCGGTATGCGACCTAGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGCTTCGTGGCTCCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGAATAGAGCCGCCCGTCTTGCCCCAAAGTGTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTTCTCCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA | 1956 | 46.01 | MAATAPAPATAASVQTAAIPPSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFESEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGMRRGGNSQSVQQQLLLRGSGQGFRYMNNARNGIEPPVLPQSVVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19651823 | 19654892 | + | CrPI670011_08g006660.1 | Cre08g0666 | 505584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0666 | 651 | SUPERFAMILY | PABC (PABP) domain | 505 | 638 | IPR036053 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | poly_2 | 571 | 634 | IPR002004 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | FunFam | Polyadenylate-binding protein | 118 | 204 | - | - | |
Cre08g0666 | 651 | Gene3D | - | 555 | 636 | - | - | |
Cre08g0666 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 559 | 636 | IPR002004 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Pfam | RNA recognition motif | 215 | 283 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Pfam | RNA recognition motif | 37 | 107 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Pfam | RNA recognition motif | 125 | 193 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Pfam | RNA recognition motif | 319 | 387 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Gene3D | - | 124 | 197 | IPR012677 | - | |
Cre08g0666 | 651 | FunFam | Polyadenylate-binding protein | 555 | 637 | - | - | |
Cre08g0666 | 651 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 632 | IPR006515 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676(InterPro) | |
Cre08g0666 | 651 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676(InterPro) | |
Cre08g0666 | 651 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676(InterPro) | |
Cre08g0666 | 651 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676(InterPro) | |
Cre08g0666 | 651 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
Cre08g0666 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Cre08g0666 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Gene3D | - | 299 | 403 | IPR012677 | - | |
Cre08g0666 | 651 | Coils | Coil | 392 | 412 | - | - | |
Cre08g0666 | 651 | FunFam | Polyadenylate-binding protein | 205 | 299 | - | - | |
Cre08g0666 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 200 | IPR035979 | GO:0003676(InterPro) | |
Cre08g0666 | 651 | PANTHER | RNA BINDING PROTEIN | 23 | 216 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Cre08g0666 | 651 | Coils | Coil | 286 | 306 | - | - | |
Cre08g0666 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 304 | 321 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cre08g0666 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 213 | 228 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cre08g0666 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 322 | 337 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cre08g0666 | 651 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 337 | 349 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
Cre08g0666 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 566 | 631 | IPR002004 | GO:0003723(InterPro) | |
Cre08g0666 | 651 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
Cre08g0666 | 651 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Cre08g0666 | 651 | Gene3D | - | 199 | 298 | IPR012677 | - | |
Cre08g0666 | 651 | Gene3D | - | 31 | 123 | IPR012677 | - | |
Cre08g0666 | 651 | FunFam | Polyadenylate-binding protein | 12 | 117 | - | - | |
Cre08g0666 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 398 | IPR035979 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0965 | Cre-Chr2:6960819 | Cre08g0666 | Cre-Chr8:19651823 | 3.10E-185 | dispersed | |
Cre05g1194 | Cre-Chr5:11554636 | Cre08g0666 | Cre-Chr8:19651823 | 7.90E-189 | dispersed | |
Cre08g0666 | Cre-Chr8:19651823 | Cre10g2069 | Cre-Chr10:35373422 | 2.40E-121 | dispersed | |
Cre08g0666 | Cre-Chr8:19651823 | Cre08g0669 | Cre-Chr8:19671000 | 7.30E-09 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0666 | K13126 | - | csv:101219081 | 1153.66 |