Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0673 ATGGAAGGGGTAATCCATCAATTTCTTGAACGATGGCTGTTGTACGTTATAGCTATGTGCTTAAGCTTAATAATAGGTAGTTCATTAGTCGCTTCTCTCTCGCCTGATGGAGAAGCGCTTCTCTCTCTCATTGCTGCTTCTGGTTCTTCTGTAGCATCATCTTCTTCTGTTCTTGCTTCTTGGAATCCATCTAGCCAAAACCCATGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTATCTCTCCCTAAAACATTCCTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCTTCTCTATCTTCTCTGCAACTTCTTAATCTATCATCCACCAATGTATCTGGTTCAATCCCTCCTTCTTTTGGCCTACTCACCCATCTTCGCTTGTTGGACCTTTCTTCCAACAATCTCTACGGCCCTATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTTAATTCCAATAGACTGTCTGGTAAGATTCCTCCTCAGCTTTCTAATCTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCAGTTTAACGGCTCCATACCATCGCAGTTTGGTTCTTTGCTGTCCCTCCAAGAGTTTCGAATAGGAGGGAATCCATATCTTTCAGGAGAAATTCCACCACAAATAGGGCTGCTTACTAACCTCACTACATTTGGGGCAGCGGCTACTGCTTTATCTGGGGCTATACCGTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCACTCTATGATACTGAGATGTCGGGTTCCATACCTCCTGAGTTGGGGCTTTGTTCCGAGATAAGGGATTTGTATTTACATATGAACAAGCTCACTGGTAATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTAACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGGGCGATACCATCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGGGAAATTCCAAGTGATTTGGGGAAGTTAGTTGTTCTTGAACAGTTTCATATATCTGACAATTCAATCTCGGGCTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTTGATAATAATCAATTATCAGGTGTAATTCCATCACAACTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACTGTACCATCTTCCTTTGGCAACTGCACTGAGTTGTATGCCCTTGATCTTTCAAGAAACAAGCTCACTGGGATTATCCCGGAAGAAATTTTTGGCTTGAAGAAGTTGAGCAAGCTATTGCTCCTTGGAAATTCTTTATCTGGTGGGTTGCCTCAAAGTGTTGCGAATTGTCAATCATTGGTGAGGTTGAGGCTTGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTCGTCTTCCGCCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACTGGGGAAATTCCTCCCCAGCTTGGAGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCACTGGTGAAATTCCTCAGAGCTTTGGAAATTTCAGTTATTTGAATAAACTTATACTCAATAATAATCTACTGACAGGGTCAATCCCAAAGTCTATTAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTGCAACAGTCTCTCTGGCACAATACCACCAGAAATTGGTTACATGAAGAGCTTGTCTATCAGTTTGGACTTGAGCTCAAACAGGATAAGCGGAGAAATTCCCGAGACGATATCCAGTTTGACACAGTTACAGTCACTTGATCTTTCCAATAACAGGCTTTATGGAAATATTAAAGTGTTGGGTCTCTTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCAGGTCCCATGCCTGTAACGCCATTTTTTAGTACTCTATCAGAAGATTCATATTATCAAAACCTGAATCTCTGTGAATCACTTGATGGGTTTACTTGTTCCTCAAAATCAATGCACAGAAATGGCTTGAAGTCTGCAAAAGCTGCTGCTTTTATCTCCATCATTCTTGCTGCAGTTGTTGTCATACTTTTTGCTTTGTGGATGCTAGTTTCACGAAATCGCAAGTACATGGAACAGAAACATTCTGGGACATTGTCCTCTGCATCAGCCGCCGAGGATTTCTCTTATCCATGGACCTTCATCCCGTTTCAGAAGCTCAACTTTACCATAGATAACATCTTGGAATCAATGAAAGATGAAAATATAATTGGAAAAGGTTGCTCTGGGGTTGTTTATAAAGCAGATATGCCCAATGGTGAATTAGTTGCCGTGAAGAAACTGTGGAAAACAAAGCAAGATGAAGAAGCAGTCGACTCGTGTGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATTGTGAAACTCATAGGTTATTGTTCCAATAGAAGTGTCAAGATACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTACAAGGAAACAGAAATCTGGACTGGGAGACAAGGTATAAAATTGCGGTTGGGACGGCTCAGGGATTGGCTTATCTTCATCATGATTGCGTGCCTGCAATTCTTCACAGAGATGTCAAATGCAATAACATACTTCTAGACTCAAAGTTTGAAGCTTATCTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACCCCAAGTTATCACCATGCGATTTCGAGAGTAGCCGGGTCTTACGGATATATCGCCCCAGAATATGGATATACCATGAACATCACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTTTACTAGAGATACTAAGTGGGCGTAGTGCAATCGAGACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGTCAAGTTTCGAACCCGCCATAACAATACTCGATACAAAGCTCCAGGGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTTTGTGTGAACTCTTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGGAAAACCTCCCAACCTCTAATAAAGCAGTCCTCAAATTTAAGTTCAAATAATACTTTCTTTTCCACAAGAAAATTGGGGTAA 3291 41.6 MEGVIHQFLERWLLYVIAMCLSLIIGSSLVASLSPDGEALLSLIAASGSSVASSSSVLASWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLSNLTSLQSLCLQDNQFNGSIPSQFGSLLSLQEFRIGGNPYLSGEIPPQIGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEMSGSIPPELGLCSEIRDLYLHMNKLTGNIPPQLGRLQKLTSLFLWGNALSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHISDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLKSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLTGIIPEEIFGLKKLSKLLLLGNSLSGGLPQSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGRLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSCNSLSGTIPPEIGYMKSLSISLDLSSNRISGEIPETISSLTQLQSLDLSNNRLYGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFSTLSEDSYYQNLNLCESLDGFTCSSKSMHRNGLKSAKAAAFISIILAAVVVILFALWMLVSRNRKYMEQKHSGTLSSASAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKILLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMSSFEPAITILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNNTFFSTRKLG 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19683736 19687310 - CrPI670011_08g006730.1 Cre08g0673 505591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0673 1096 SUPERFAMILY Protein kinase-like (PK-like) 771 1060 IPR011009 -
Cre08g0673 1096 SUPERFAMILY L domain-like 386 698 - -
Cre08g0673 1096 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cre08g0673 1096 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0673 1096 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524(InterPro)
Cre08g0673 1096 PRINTS Leucine-rich repeat signature 420 433 - -
Cre08g0673 1096 PRINTS Leucine-rich repeat signature 634 647 - -
Cre08g0673 1096 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0673 1096 SUPERFAMILY RNI-like 110 469 - -
Cre08g0673 1096 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Cre08g0673 1096 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Cre08g0673 1096 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 864 - -
Cre08g0673 1096 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 865 1077 - -
Cre08g0673 1096 SMART serkin_6 787 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0673 1096 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 443 511 - -
Cre08g0673 1096 ProSiteProfiles Leucine-rich repeat profile. 636 658 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Gene3D Transferase(Phosphotransferase) domain 1 865 1079 - -
Cre08g0673 1096 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Cre08g0673 1096 Gene3D Ribonuclease Inhibitor 454 704 IPR032675 -
Cre08g0673 1096 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 512 707 - -
Cre08g0673 1096 SMART LRR_typ_2 489 512 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 176 200 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 537 560 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 585 609 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 152 175 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 297 321 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 634 659 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 393 416 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 417 441 IPR003591 -
Cre08g0673 1096 SMART LRR_typ_2 128 151 IPR003591 -
Cre08g0673 1096 Gene3D Ribonuclease Inhibitor 388 453 IPR032675 -
Cre08g0673 1096 Gene3D Ribonuclease Inhibitor 290 387 IPR032675 -
Cre08g0673 1096 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Cre08g0673 1096 PANTHER LEUCINE RICH REPEAT KINASE 2 368 1061 IPR051420 -
Cre08g0673 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0673 1096 Gene3D Phosphorylase Kinase; domain 1 752 864 - -
Cre08g0673 1096 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 587 608 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 659 675 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 615 634 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 564 585 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 539 561 IPR001611 GO:0005515(InterPro)
Cre08g0673 1096 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1526 Cre-Chr6:10049482 Cre08g0673 Cre-Chr8:19683736 1.30E-79 dispersed
Cre07g2020 Cre-Chr7:35813225 Cre08g0673 Cre-Chr8:19683736 1.40E-86 dispersed
Cre08g0673 Cre-Chr8:19683736 Cre09g0943 Cre-Chr9:9554339 1.00E-103 dispersed
Cre08g0673 Cre-Chr8:19683736 Cre06g1542 Cre-Chr6:10320184 4.20E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64327 PF00069 Pkinase 1.60E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0673 - - - 0.0