Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0682 ATGGATTTGGCGCGCCGAGTCTCCACTCTCCAAAAGCAGCCAACCAGAATGAGAGATTCACCTGATGTTTTGGTGCCCGAGGTGAGAGACGTTAAAAATAAGGCCATCAAGTTTTCTGCAGCACTTAAAATTGGAGAACATGAGGATTTTGATTTTGTGCGTACCTTATATGAAGGTGCTATAGCTGGAGGTGCTGCTAGCCTCGTTGTAGAAGCTGCTCTATATCCAATTGATACAATAAAAACTCGTCTACAGGCTGTTCACGGAGGAGGAAAAGTTGTACTGAAGGGTCTTTATTCTGGATTGGCTGGAAATCTTGTTGGGATGTTACCTGCCACTGCCGTTTTCGTTGGTGTGTATGAGCCTACCAAGCAGAAATTGCTCAAGTCTCTCCCTGAAAACCTCAATGCTTTAGCTCATCTGGCTGCAGGTGTCGTAGGAGGAGTGGCTTCATCAATCATCCGTGTACCAACAGAGGTAGTTAAGCAAAGGATGCAGACTAGCCACTTTGCGTCTGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGCTTTAAAGGCCTTTATGCGGGTTATGGATCTTTCTTACTACGAGATTTGCCATTTGATGCCATTCAGTTCTGCATTTACGAACAACTTAGGATAGGGTACAAGCTAGCGGCACAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCGGTTACTGGGGCTATAACCACTCCTTTTGATGTGATCAAAACTCGATTAATGGTCCAGGGATCAAATAGCCAATATCAAGGTATTCGTGATTGTTGTAGGACTATAATGAAGGAAGAAGGAGCACGTGCCTTCTTAAAGGGCATAGGGCCAAGGGTATTATGGATAGGGTTAGGAGGCGCCATATTCTTTGGCGTTCTTGAAAAAACAAAGCAGATGCTTGCTAATAAGGGGCGTCCAGTGCCTGAGAAACCCGTCGAATCGCGATGA 987 45.19 MDLARRVSTLQKQPTRMRDSPDVLVPEVRDVKNKAIKFSAALKIGEHEDFDFVRTLYEGAIAGGAASLVVEAALYPIDTIKTRLQAVHGGGKVVLKGLYSGLAGNLVGMLPATAVFVGVYEPTKQKLLKSLPENLNALAHLAAGVVGGVASSIIRVPTEVVKQRMQTSHFASASNAVHVIVSREGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAVTGAITTPFDVIKTRLMVQGSNSQYQGIRDCCRTIMKEEGARAFLKGIGPRVLWIGLGGAIFFGVLEKTKQMLANKGRPVPEKPVESR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19767491 19775457 - CrPI670011_08g006820.1 Cre08g0682 505600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0682 328 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 47 321 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cre08g0682 328 SUPERFAMILY Mitochondrial carrier 57 307 IPR023395 -
Cre08g0682 328 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 58 323 - -
Cre08g0682 328 PRINTS Mitochondrial carrier protein signature 72 86 IPR002067 GO:0055085(InterPro)
Cre08g0682 328 PRINTS Mitochondrial carrier protein signature 59 72 IPR002067 GO:0055085(InterPro)
Cre08g0682 328 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085(InterPro)
Cre08g0682 328 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085(InterPro)
Cre08g0682 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 312 IPR018108 -
Cre08g0682 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 217 IPR018108 -
Cre08g0682 328 Pfam Mitochondrial carrier protein 56 89 IPR018108 -
Cre08g0682 328 Pfam Mitochondrial carrier protein 135 215 IPR018108 -
Cre08g0682 328 Pfam Mitochondrial carrier protein 230 316 IPR018108 -
Cre08g0682 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 54 126 IPR018108 -
Cre08g0682 328 Gene3D Mitochondrial carrier domain 58 319 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0682 K15111 - - csv:101220750 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0682 Cre-Chr8:19767491 Cre09g0611 Cre-Chr9:5755586 5.30E-16 dispersed
Cre02g0438 Cre-Chr2:1615590 Cre08g0682 Cre-Chr8:19767491 3.20E-109 transposed
Cre02g2238 Cre-Chr2:36004750 Cre08g0682 Cre-Chr8:19767491 1.10E-32 transposed
Cre04g0775 Cre-Chr4:26341033 Cre08g0682 Cre-Chr8:19767491 1.20E-33 transposed
Cre06g2428 Cre-Chr6:32164458 Cre08g0682 Cre-Chr8:19767491 2.30E-36 transposed
Cre08g0616 Cre-Chr8:19081475 Cre08g0682 Cre-Chr8:19767491 5.60E-30 transposed
Cre05g2263 Cre-Chr5:34197596 Cre08g0682 Cre-Chr8:19767491 1.00E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g472 . Blo13g00914 . Bda15g00180 Bpe04g01680 Bpe15g01071 Bma03g00328 . . Cmo04g01428 Cma04g01354 Cma18g00881 Car04g01431 Car18g00807 . . Cpe09g00429 . . . . . . . Cla05g02127 Cam05g2281 Cec05g2304 Cco05g2345 Clacu05g2278 Cmu05g2141 Cre05g2263 . Cone5ag0327 Cone11ag1076 Cone18ag0500 . . Chy10g01341 Cme10g00055 Blo13g00731 Blo04g00309 Bda14g00339 Bda15g00379 Bpe04g01680 . . . . . . . . . . Cpe01g01223 . . . . . . . . Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 Lsi04g00053 Csa05g02827 . .
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56