Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0699 ATGGCGAAGAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTTGCTTTTTCTGTATGTGACTGTGTTGACGGTGATCGGGTACAAATCGGAAATGGATGGAATGGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCCAATGGGCTTGCCGATGCCTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 864 51.5 MAKNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSEMDGMGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADAYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19992402 19995795 - CrPI670011_08g006990.1 Cre08g0699 505617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0699 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Cre08g0699 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cre08g0699 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g0699 287 FunFam Probable aquaporin PIP1-2 22 285 - -
Cre08g0699 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Cre08g0699 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cre08g0699 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0699 Cre-Chr8:19992402 Cre09g2261 Cre-Chr9:41798059 8.50E-103 dispersed
Cre10g2147 Cre-Chr10:36030815 Cre08g0699 Cre-Chr8:19992402 2.50E-118 wgd
Cre02g2421 Cre-Chr2:37558276 Cre08g0699 Cre-Chr8:19992402 9.30E-126 wgd
Cre04g0988 Cre-Chr4:28472818 Cre08g0699 Cre-Chr8:19992402 6.60E-80 wgd
Cre05g2278 Cre-Chr5:34358408 Cre08g0699 Cre-Chr8:19992402 4.30E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0699 K09872 - csv:101205700 514.227