Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0705 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATTAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGAACAATGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCACAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCGGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTCGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAATGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTTAAGATGGCTTTTGAAACCGAGGATGCGTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTTTATTTGATCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACCGCTTCCGGGACAATTTTCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCCGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCAAAAGAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAACGGTCAGGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAATATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCCCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAG 2088 44.68 MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRNNEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAMLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSLFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPNLQISKPLPGQFSPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRILGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20032569 20035089 - CrPI670011_08g007050.1 Cre08g0705 505623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0705 695 MobiDBLite consensus disorder prediction 548 600 - -
Cre08g0705 695 SUPERFAMILY DNA-binding pseudobarrel domain 110 225 IPR015300 -
Cre08g0705 695 FunFam Auxin response factor 120 224 - -
Cre08g0705 695 Gene3D - 120 224 IPR015300 -
Cre08g0705 695 Gene3D - 320 391 - -
Cre08g0705 695 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Cre08g0705 695 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre08g0705 695 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Cre08g0705 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 687 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre08g0705 695 FunFam Auxin response factor 319 392 - -
Cre08g0705 695 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Cre08g0705 695 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Cre08g0705 695 ProSiteProfiles PB1 domain profile. 607 687 IPR053793 -
Cre08g0705 695 Gene3D - 606 690 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1170 Cre-Chr7:24085315 Cre08g0705 Cre-Chr8:20032569 2.60E-09 dispersed
Cre08g0705 Cre-Chr8:20032569 Cre08g1024 Cre-Chr8:23401708 6.20E-91 dispersed
Cre02g2429 Cre-Chr2:37637346 Cre08g0705 Cre-Chr8:20032569 1.50E-209 wgd
Cre04g0998 Cre-Chr4:28593359 Cre08g0705 Cre-Chr8:20032569 1.40E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54160 PF02362 B3 4.10E-20 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0705 K14486 - csv:101204568 1194.87