Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0711 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCGGTGAAGGAGACCTCTTTGTGTGGCGACGTGGCGGCGTATTGGAGCGGTGCAATGAAGGGGCTCGAGCGGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCTATTGCTACCCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGCCCTGTTGTGGAGGCGAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCATATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAACGCTGGAATTTTTGGAAACGATCCAAATTCTTGCCATACATTGCCACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATTACAGCTTCCGGTGACCTGGTTCCTCTCTCATATATTGCTGGACTTTTGACTGGTAGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAATCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGAGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCGCTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGCGTGTCCATGGATAATACTCGTTTAGCCCTTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTACTAGTAGAAATCCAAGTTTGGATTACGGGTTCAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGCGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCGAGAAAGACAGCGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTGGTGGCATTGTGCCAAGCTATTGATTTAAGACACATGGAGGAGATTTTGAAGAAAACAGTAAAGAACACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACGTTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAAGCTAAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCAAAAGATCACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCAATGTACAAGTTCGTTAGAGAAACGTTGGGGACTCGATTGTTGACCGGTGAGAAAGATGTTTCACCAGGAGAAGAATTCGATAAGGTTTTTTCAGCTATTTCTGATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGCTCCGCTTCCTCTTAGTTAG 2142 42.44 MEFHPENGNHGSVKETSLCGDVAAYWSGAMKGLERSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPVVEASSRWVVKSMTNGTDSYGVTTGFGSTSYRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLPQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSTSRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHMEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHVFAYIDDPCSASYPLMQKLRQVLVDHALKNGEKENNPSASIFQKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKECRSYPMYKFVRETLGTRLLTGEKDVSPGEEFDKVFSAISDGKLIDPMLECLKDWNGAPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20130380 20134597 + CrPI670011_08g007110.1 Cre08g0711 505629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0711 713 CDD PAL-HAL 58 523 IPR001106 -
Cre08g0711 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cre08g0711 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Cre08g0711 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Cre08g0711 713 SUPERFAMILY L-aspartase-like 25 712 IPR008948 GO:0003824(InterPro)
Cre08g0711 713 PANTHER HISTIDINE AMMONIA-LYASE 22 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre08g0711 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cre08g0711 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cre08g0711 713 FunFam Phenylalanine ammonia-lyase 260 542 - -
Cre08g0711 713 Gene3D - 526 647 IPR023144 -
Cre08g0711 713 Gene3D - 16 259 IPR024083 -
Cre08g0711 713 NCBIfam phenylalanine ammonia-lyase 26 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1548 Cre-Chr7:30908171 Cre08g0711 Cre-Chr8:20130380 0.00E+00 dispersed
Cre07g1549 Cre-Chr7:30913399 Cre08g0711 Cre-Chr8:20130380 0.00E+00 dispersed
Cre02g2437 Cre-Chr2:37747868 Cre08g0711 Cre-Chr8:20130380 0.00E+00 wgd
Cre04g1001 Cre-Chr4:28642727 Cre08g0711 Cre-Chr8:20130380 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0711 K10775 - csv:101206890 1293.1