Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0734 ATGTTTGCTACTACTGGCATTCTCTTCTTCATCTGGTTTTTGAGCTCCACTCTGCCATCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCAGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATTTCCAGAAGACAAATGCTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTGGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTGCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGGTCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCTGGAGACGAAAGCTCCTCCAGCTCGGGGTCCAGTGGCAGCAGCGATGGCGGTGGCGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACGATGCTTTATTATCATCAACATTGTCATTGTAG 1497 51.44 MFATTGILFFIWFLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSISRRQMLSIHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSSSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYDALLSSTLSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20400979 20406612 - CrPI670011_08g007340.1 Cre08g0734 505652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0734 498 Pfam Pectate lyase 157 338 IPR002022 -
Cre08g0734 498 PANTHER PECTATE LYASE 18-RELATED 32 416 IPR045032 GO:0030570(InterPro)
Cre08g0734 498 Gene3D - 74 416 IPR012334 -
Cre08g0734 498 MobiDBLite consensus disorder prediction 416 443 - -
Cre08g0734 498 SMART amb_all 149 346 IPR002022 -
Cre08g0734 498 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cre08g0734 498 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cre08g0734 498 FunFam Pectate lyase 74 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0948 Cre-Chr4:28137859 Cre08g0734 Cre-Chr8:20400979 1.60E-40 dispersed
Cre08g0734 Cre-Chr8:20400979 Cre08g1690 Cre-Chr8:29305832 1.60E-141 dispersed
Cre04g1031 Cre-Chr4:28914331 Cre08g0734 Cre-Chr8:20400979 2.70E-178 wgd
Cre05g2309 Cre-Chr5:34642720 Cre08g0734 Cre-Chr8:20400979 7.70E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0734 K01728 - csv:101207535 923.694