Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0800 ATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGCCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCTTTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACTGTTGGTAAAGACAATGAGGACAATCATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGTGCGGGTCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCCGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCCGTGATGGATGTTCCATATGTCGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAATGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCGCCTGAGCCGAAGTATCAGCTTCGAAGAACTTCGTCAGCGCCGTTCTAA 951 47.11 MGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNHVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMPYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21068670 21072901 + CrPI670011_08g008000.1 Cre08g0800 505718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0800 316 MobiDBLite consensus disorder prediction 247 296 - -
Cre08g0800 316 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 244 296 - -
Cre08g0800 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 249 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0800 316 MobiDBLite consensus disorder prediction 247 316 - -
Cre08g0800 316 SUPERFAMILY Leucine zipper domain 246 291 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0800 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 244 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0800 316 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 21 314 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cre08g0800 316 CDD bZIP_plant_BZIP46 246 300 - -
Cre08g0800 316 Pfam bZIP transcription factor 246 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0800 316 Coils Coil 262 296 - -
Cre08g0800 316 Gene3D - 244 297 - -
Cre08g0800 316 SMART brlzneu 242 314 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1703 Cre-Chr3:33780748 Cre08g0800 Cre-Chr8:21068670 9.50E-52 dispersed
Cre08g0800 Cre-Chr8:21068670 Cre10g2018 Cre-Chr10:34824571 3.60E-30 dispersed
Cre08g0800 Cre-Chr8:21068670 Cre08g1544 Cre-Chr8:28089715 5.10E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54168 PF00170 bZIP_1 3.30E-13 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0800 K14432 - csv:101213915 568.926