Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0800 | ATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGCCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCTTTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACTGTTGGTAAAGACAATGAGGACAATCATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGTGCGGGTCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCCGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCCGTGATGGATGTTCCATATGTCGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAATGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCGCCTGAGCCGAAGTATCAGCTTCGAAGAACTTCGTCAGCGCCGTTCTAA | 951 | 47.11 | MGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNHVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMPYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21068670 | 21072901 | + | CrPI670011_08g008000.1 | Cre08g0800 | 505718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0800 | 316 | MobiDBLite | consensus disorder prediction | 247 | 296 | - | - | |
Cre08g0800 | 316 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | 244 | 296 | - | - | |
Cre08g0800 | 316 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 249 | 264 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0800 | 316 | MobiDBLite | consensus disorder prediction | 247 | 316 | - | - | |
Cre08g0800 | 316 | SUPERFAMILY | Leucine zipper domain | 246 | 291 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0800 | 316 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 244 | 289 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0800 | 316 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 21 | 314 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Cre08g0800 | 316 | CDD | bZIP_plant_BZIP46 | 246 | 300 | - | - | |
Cre08g0800 | 316 | Pfam | bZIP transcription factor | 246 | 293 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0800 | 316 | Coils | Coil | 262 | 296 | - | - | |
Cre08g0800 | 316 | Gene3D | - | 244 | 297 | - | - | |
Cre08g0800 | 316 | SMART | brlzneu | 242 | 314 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1703 | Cre-Chr3:33780748 | Cre08g0800 | Cre-Chr8:21068670 | 9.50E-52 | dispersed | |
Cre08g0800 | Cre-Chr8:21068670 | Cre10g2018 | Cre-Chr10:34824571 | 3.60E-30 | dispersed | |
Cre08g0800 | Cre-Chr8:21068670 | Cre08g1544 | Cre-Chr8:28089715 | 5.10E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54168 | PF00170 | bZIP_1 | 3.30E-13 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0800 | K14432 | - | csv:101213915 | 568.926 |