Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0804 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGACGATTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAGAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGCTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGCGGGAGCGGATCTCTTTTGATCAGTGACACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGGCAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGACTGATTCTTCCCATATATTTAGCATGCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTGTAATCATCCTAAGCCACCTACTCGGCTGATGAACCCGACTCCACCCTTTAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACAATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGATGATAGCTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCGGCAGCATTCGATTCTCCATTCGGCATGTATCCCAACGATAACATCTCCGACTTCAGATTTGGTTCTCCATTTAATTTGGCATCAATTGATTATGCAGCAGTAGACACACCATTGCCCAAACAAGATACTCCCTTATGGTACCTTTGA 1860 45.81 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMADESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPFRTDSSHIFSMPSFQTNDDKSSSPAPPSCNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDNHNQQQQLPKFQLQVDDSLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNLASIDYAAVDTPLPKQDTPLWYL 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21113576 21115435 + CrPI670011_08g008040.1 Cre08g0804 505722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0804 619 FunFam Ethylene insensitive 3-like 1 83 161 - -
Cre08g0804 619 Coils Coil 36 70 - -
Cre08g0804 619 MobiDBLite consensus disorder prediction 69 94 - -
Cre08g0804 619 MobiDBLite consensus disorder prediction 24 46 - -
Cre08g0804 619 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Cre08g0804 619 MobiDBLite consensus disorder prediction 443 476 - -
Cre08g0804 619 FunFam Ethylene insensitive 3-like 1 171 308 - -
Cre08g0804 619 Coils Coil 373 393 - -
Cre08g0804 619 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cre08g0804 619 MobiDBLite consensus disorder prediction 460 474 - -
Cre08g0804 619 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 608 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Cre08g0804 619 MobiDBLite consensus disorder prediction 443 459 - -
Cre08g0804 619 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cre08g0804 619 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0804 K14514 - - csv:101214396 1134.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1623 Cre-Chr3:32187983 Cre08g0804 Cre-Chr8:21113576 3.70E-100 dispersed
Cre03g1685 Cre-Chr3:33604496 Cre08g0804 Cre-Chr8:21113576 3.30E-200 dispersed
Cre07g1328 Cre-Chr7:28038929 Cre08g0804 Cre-Chr8:21113576 2.90E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g853 . . . . . . . . . . . . . . . . . Bhi04g01650 . . . . . Lcy10g1635 . . . . . . . . . . . Lsi08g00615 Csa06g00461 . . . . . . . . . . . Cmo04g02607 . Cma04g02492 . Car04g02399 . . Cpe01g02155 . . . . . . . Cla08g00868 Cam08g1308 Cec08g0891 Cco08g1004 Clacu08g1013 . Cre08g0804 . . . Cme03g01109
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g1685 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.3e-190 663.3
Cre08g0804 . 8 507 EIL Transcription Factor Family AT2G27050 61.9 1.4e-168 590.1
Cre03g1623 . 44 326 EIL Transcription Factor Family AT2G27050 62.5 3.2e-96 349.7
Cre03g1623 . 44 578 EIL Transcription Factor Family AT1G73730 54.9 7.8e-145 511.1
Cre03g1685 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.9e-105 378.3
Cre08g0804 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.5e-103 373.2
Cre07g1328 . 24 273 EIL Transcription Factor Family AT1G73730 55.3 2.5e-74 276.9
Cre03g1685 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.4e-211 733.0
Cre08g0804 . 7 505 EIL Transcription Factor Family AT3G20770 63.4 1.2e-170 597.0
Cre03g1623 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.3e-98 357.8
Cre07g1328 . 25 365 EIL Transcription Factor Family AT5G65100 50.1 1.6e-97 354.0
Cre03g1623 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.9e-70 263.5
Cre07g1328 . 22 365 EIL Transcription Factor Family AT5G10120 54.6 5.5e-99 358.6
Cre03g1623 . 44 290 EIL Transcription Factor Family AT5G10120 54.4 6.8e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54169 PF04873 EIN3 3.60E-132 No_clan Cre TF