Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0809 ATGGAGAAGTTCCCTGTTTATTCTCTTCATTCCCTGTTGATGTTTCTATTCATTTTGAGTCTCATCGTTCCAAGTCAGCCTCTTCTGACTGAGACTCTAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACTGGTGTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGCGATCAGGTTTCCAGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAATTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATGGTTAAGAGGATTCCTGATCTTTCTCAGCTGAGGAAGTTGGAGGTTCTAGATCTGTCAATCAACTTCTTTTCTGGCCAATTTCCAAGCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGGCTGGTGAGATACCGGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTAAAGGCATTAGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAATAATCTGAATAAGCTTGAGCTTTTTGTTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATGTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGAAACCTGAGGAATTTGGTGGTTTTTCAATTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCGCTCAACAGCATTGACATATCAGAGAATCAATTTTCAGGGAACTTTCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTTTGGAAAATAGATTTTCAGGAGAGCTGCCACTTTCTTTAGCTGACTGCAAATCAATCCAAAGATTCAGAATCAATAATAATCAAATGTCTGGGAGGATTCCAGATGGGTTATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGATAATGAATTCACTGGAACTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAAACTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAACAATGAATTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTCAAGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGCTCAATCCCATTAGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTGCGTTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAATCCTTGGAGAAGATGAAACTAAGTTCGATCGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCGGTGAGAATGGCCTAGATACCAGTCAGGAAGGGGACCAACAAGGAATTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAGTTTTAAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAACGGTGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGTAACCTGTGTGAAGCACTTCAGAGACAGATCAAGGGTGGACAGCCTGAACTGAACTGGTATCAGAGGTACAGGATTGCATTGGGAGCAGCCAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTTGATGAAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGCTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGCTATATTGCTCCTGAGCTAGCGTATACTCTGAAAGTTTCCGAAAAAAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATGAATATGGAGAAGGAAAAGATATAGTCTACTGGATCTCAACACACCTCGATGACCGTGATAATGTCCTCAAGCTTCTAGATATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAGTGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 39.61 MEKFPVYSLHSLLMFLFILSLIVPSQPLLTETLALLRFKENLKDPTGVLHSWIDSESPCGFSGITCDQVSRKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLINCSNLRVLNLTDNEMVKRIPDLSQLRKLEVLDLSINFFSGQFPSWVGNLTGLVSLGLGENEFEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLNNLNKLELFVNKLTGEIPPEISNLTLLQEIDMSANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLADCKSIQRFRINNNQMSGRIPDGLWALPNAKMIDFSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGKLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFALISSLNSLNLSSNKLTGIIPESLEKMKLSSIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGENGLDTSQEGDQQGIPKWKIASFHQVEIDADEICSFKEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQPELNWYQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDEDYEPKIADFGVAKVADQFQSASEHSSLAGTHGYIAPELAYTLKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSVSLNNSSNKNIKDFV 976
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 21155273 21158488 - CrPI670011_08g008090.1 Cre08g0809 505727
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0809 976 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Cre08g0809 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 963 - -
Cre08g0809 976 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Cre08g0809 976 Gene3D Transferase(Phosphotransferase) domain 1 755 973 - -
Cre08g0809 976 Gene3D Ribonuclease Inhibitor 315 593 IPR032675 -
Cre08g0809 976 PRINTS Leucine-rich repeat signature 217 230 - -
Cre08g0809 976 PRINTS Leucine-rich repeat signature 526 539 - -
Cre08g0809 976 Gene3D Ribonuclease Inhibitor 181 239 IPR032675 -
Cre08g0809 976 Gene3D Ribonuclease Inhibitor 240 312 IPR032675 -
Cre08g0809 976 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0809 976 SUPERFAMILY L domain-like 251 573 - -
Cre08g0809 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0809 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Cre08g0809 976 SUPERFAMILY Protein kinase-like (PK-like) 677 952 IPR011009 -
Cre08g0809 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 FunFam Receptor-like protein kinase HSL1 290 594 - -
Cre08g0809 976 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 289 - -
Cre08g0809 976 SMART LRR_typ_2 454 478 IPR003591 -
Cre08g0809 976 SMART LRR_typ_2 262 286 IPR003591 -
Cre08g0809 976 SMART LRR_typ_2 190 214 IPR003591 -
Cre08g0809 976 SMART LRR_typ_2 94 118 IPR003591 -
Cre08g0809 976 SMART LRR_typ_2 526 549 IPR003591 -
Cre08g0809 976 SMART LRR_typ_2 141 165 IPR003591 -
Cre08g0809 976 SUPERFAMILY L domain-like 57 305 - -
Cre08g0809 976 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0809 976 FunFam Probable inactive receptor kinase RLK902 28 182 - -
Cre08g0809 976 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cre08g0809 976 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cre08g0809 976 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Cre08g0809 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0809 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 328 954 IPR051564 GO:0016020(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0941 Cre-Chr6:2821371 Cre08g0809 Cre-Chr8:21155273 1.30E-38 dispersed
Cre08g0809 Cre-Chr8:21155273 Cre08g1139 Cre-Chr8:24599080 1.70E-78 dispersed
Cre02g0572 Cre-Chr2:2785059 Cre08g0809 Cre-Chr8:21155273 1.60E-07 wgd
Cre02g1412 Cre-Chr2:24573965 Cre08g0809 Cre-Chr8:21155273 3.90E-15 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64331 PF00069 Pkinase 2.00E-48 CL0016 Cre PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0809 - - - 0.0