Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0826 ATGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTTATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAGTGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCCCCACCCCTCTCCATTACTCCACTTTACCAATGTCGCAAATTTAG 741 41.57 MISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNSVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLPTPLHYSTLPMSQI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21363585 21368737 - CrPI670011_08g008260.1 Cre08g0826 505744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0826 246 CDD AP2 36 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0826 246 SMART rav1_2 37 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0826 246 Pfam AP2 domain 36 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0826 246 MobiDBLite consensus disorder prediction 106 126 - -
Cre08g0826 246 Gene3D AP2/ERF domain 36 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0826 246 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0826 246 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 129 - -
Cre08g0826 246 FunFam AP2-like ethylene-responsive transcription factor 36 97 - -
Cre08g0826 246 SUPERFAMILY DNA-binding domain 36 97 IPR016177 GO:0003677(InterPro)
Cre08g0826 246 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0826 Cre-Chr8:21363585 Cre10g1625 Cre-Chr10:30335105 1.20E-52 dispersed
Cre05g2383 Cre-Chr5:35373934 Cre08g0826 Cre-Chr8:21363585 6.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54172 PF00847 AP2 3.90E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0826 - - - 0.0