Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0826 | ATGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTTATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAGTGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCCCCACCCCTCTCCATTACTCCACTTTACCAATGTCGCAAATTTAG | 741 | 41.57 | MISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNSVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLPTPLHYSTLPMSQI | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21363585 | 21368737 | - | CrPI670011_08g008260.1 | Cre08g0826 | 505744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0826 | 246 | CDD | AP2 | 36 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0826 | 246 | SMART | rav1_2 | 37 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0826 | 246 | Pfam | AP2 domain | 36 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0826 | 246 | MobiDBLite | consensus disorder prediction | 106 | 126 | - | - | |
Cre08g0826 | 246 | Gene3D | AP2/ERF domain | 36 | 97 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0826 | 246 | ProSiteProfiles | AP2/ERF domain profile. | 37 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0826 | 246 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 2 | 129 | - | - | |
Cre08g0826 | 246 | FunFam | AP2-like ethylene-responsive transcription factor | 36 | 97 | - | - | |
Cre08g0826 | 246 | SUPERFAMILY | DNA-binding domain | 36 | 97 | IPR016177 | GO:0003677(InterPro) | |
Cre08g0826 | 246 | MobiDBLite | consensus disorder prediction | 108 | 126 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0826 | Cre-Chr8:21363585 | Cre10g1625 | Cre-Chr10:30335105 | 1.20E-52 | dispersed | |
Cre05g2383 | Cre-Chr5:35373934 | Cre08g0826 | Cre-Chr8:21363585 | 6.30E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54172 | PF00847 | AP2 | 3.90E-12 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0826 | - | - | - | 0.0 |