Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0830 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCCGAACTCTCGCCGGAAACTGTTTCGAACTGCAGACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGCAGCAGTCGACCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGCCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 831 47.05 MLRLQWLSSSLVPSFNSELSPETVSNCRLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQQQSTFEPGSQTDSFASQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR 276
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 21393341 21396949 + CrPI670011_08g008300.1 Cre08g0830 505748
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0830 276 Gene3D Transcriptional Coactivator Pc4; Chain A 84 257 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g0830 276 MobiDBLite consensus disorder prediction 50 81 - -
Cre08g0830 276 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 84 260 - -
Cre08g0830 276 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cre08g0830 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 276 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cre08g0830 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 276 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0158 Cre-Chr8:3467282 Cre08g0830 Cre-Chr8:21393341 9.50E-41 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54174 PF08536 Whirly 9.30E-61 CL0609 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0830 K26559 - csv:101203474 477.248