Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g0830 | ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCCGAACTCTCGCCGGAAACTGTTTCGAACTGCAGACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGCAGCAGTCGACCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGCCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG | 831 | 47.05 | MLRLQWLSSSLVPSFNSELSPETVSNCRLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQQQSTFEPGSQTDSFASQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR | 276 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21393341 | 21396949 | + | CrPI670011_08g008300.1 | Cre08g0830 | 505748 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g0830 | 276 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 84 | 257 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cre08g0830 | 276 | MobiDBLite | consensus disorder prediction | 50 | 81 | - | - | |
| Cre08g0830 | 276 | FunFam | Single-stranded DNA-binding protein WHY2, mitochondrial | 84 | 260 | - | - | |
| Cre08g0830 | 276 | Pfam | Whirly transcription factor | 99 | 233 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
| Cre08g0830 | 276 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 42 | 276 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
| Cre08g0830 | 276 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 91 | 276 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g0158 | Cre-Chr8:3467282 | Cre08g0830 | Cre-Chr8:21393341 | 9.50E-41 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 54174 | PF08536 | Whirly | 9.30E-61 | CL0609 | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g0830 | K26559 | - | csv:101203474 | 477.248 |