Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0841 | ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGTTGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATAGCCCAAGATGCCTACAGTCCTGACCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCGACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCTTCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGGTGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAGTGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAGCATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG | 1308 | 48.09 | MVGFRTLFVCSLLFFVVANAVVDEDEYWRNRAAEAQKIAQDAYSPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAVEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGAYVRRLARFSGTLACAPRKPC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21488235 | 21489789 | + | CrPI670011_08g008410.1 | Cre08g0841 | 505759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0841 | 435 | SUPERFAMILY | Pectin lyase-like | 75 | 397 | IPR011050 | - | |
Cre08g0841 | 435 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 430 | IPR045032 | GO:0030570(InterPro) | |
Cre08g0841 | 435 | Pfam | Pectate lyase, N terminus | 23 | 72 | IPR007524 | GO:0030570(InterPro) | |
Cre08g0841 | 435 | SMART | amb_all | 158 | 355 | IPR002022 | - | |
Cre08g0841 | 435 | Gene3D | - | 83 | 428 | IPR012334 | - | |
Cre08g0841 | 435 | Pfam | Pectate lyase | 168 | 349 | IPR002022 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 230 | 251 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 332 | 351 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 374 | 398 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 406 | 429 | IPR018082 | - | |
Cre08g0841 | 435 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1327 | Cre-Chr1:26471749 | Cre08g0841 | Cre-Chr8:21488235 | 1.20E-175 | dispersed | |
Cre08g0841 | Cre-Chr8:21488235 | Cre10g1623 | Cre-Chr10:30316806 | 1.30E-184 | dispersed | |
Cre08g0841 | Cre-Chr8:21488235 | Cre05g2625 | Cre-Chr5:37313946 | 1.90E-191 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0841 | K01728 | - | csv:101217922 | 815.839 |