Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0841 ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGTTGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATAGCCCAAGATGCCTACAGTCCTGACCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCGACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCTTCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGGTGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAGTGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAGCATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 48.09 MVGFRTLFVCSLLFFVVANAVVDEDEYWRNRAAEAQKIAQDAYSPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAVEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGAYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21488235 21489789 + CrPI670011_08g008410.1 Cre08g0841 505759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0841 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
Cre08g0841 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Cre08g0841 435 Pfam Pectate lyase, N terminus 23 72 IPR007524 GO:0030570(InterPro)
Cre08g0841 435 SMART amb_all 158 355 IPR002022 -
Cre08g0841 435 Gene3D - 83 428 IPR012334 -
Cre08g0841 435 Pfam Pectate lyase 168 349 IPR002022 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cre08g0841 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1327 Cre-Chr1:26471749 Cre08g0841 Cre-Chr8:21488235 1.20E-175 dispersed
Cre08g0841 Cre-Chr8:21488235 Cre10g1623 Cre-Chr10:30316806 1.30E-184 dispersed
Cre08g0841 Cre-Chr8:21488235 Cre05g2625 Cre-Chr5:37313946 1.90E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0841 K01728 - csv:101217922 815.839