Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0848 ATGCTACCCAACGTGGCCTTCAGTGCCCCTGAGCCTCGACCCACGCTACATGTAATACATGTTTGGAGCATCACAATGCTTGAGCATAGCATCGTGACACTACCTTATTTGGTGCTCTCAGTGGTGTCAGAACGAACCGGATGGCCCACTCTGCTCCCCTACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACATGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATCGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCGGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGGAGGGGATGCATTTCTCCTTTGTCCCTGTGGAGATTTTAATTCCTCATATTTGA 3771 42.38 MLPNVAFSAPEPRPTLHVIHVWSITMLEHSIVTLPYLVLSVVSERTGWPTLLPYPVRPYGDPRRTFFFFHHRQATVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDMRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEEGMHFSFVPVEILIPHI 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21571415 21579917 - CrPI670011_08g008480.1 Cre08g0848 505766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0848 1256 Gene3D PAS domain 718 855 - -
Cre08g0848 1256 Gene3D - 512 685 IPR043150 -
Cre08g0848 1256 MobiDBLite consensus disorder prediction 106 126 - -
Cre08g0848 1256 Pfam Phytochrome region 520 694 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1058 1219 IPR036890 -
Cre08g0848 1256 ProSiteProfiles Histidine kinase domain profile. 1007 1226 IPR005467 -
Cre08g0848 1256 SMART gaf_1 325 517 IPR003018 GO:0005515(InterPro)
Cre08g0848 1256 Pfam PAS fold 856 978 IPR013767 GO:0006355(InterPro)
Cre08g0848 1256 Pfam PAS fold 726 840 IPR013767 GO:0006355(InterPro)
Cre08g0848 1256 ProSiteProfiles PAS repeat profile. 723 793 IPR000014 -
Cre08g0848 1256 Gene3D - 1063 1228 IPR036890 -
Cre08g0848 1256 NCBIfam PAS domain S-box protein 730 846 IPR000014 -
Cre08g0848 1256 ProSiteProfiles PAS repeat profile. 856 908 IPR000014 -
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 870 976 IPR035965 -
Cre08g0848 1256 SMART pas_2 725 791 IPR000014 -
Cre08g0848 1256 SMART pas_2 855 924 IPR000014 -
Cre08g0848 1256 SMART HKATPase_4 1112 1224 IPR003594 -
Cre08g0848 1256 CDD PAS 734 840 IPR000014 -
Cre08g0848 1256 Gene3D - 306 668 IPR029016 -
Cre08g0848 1256 Pfam GAF domain 328 506 IPR003018 GO:0005515(InterPro)
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 729 836 IPR035965 -
Cre08g0848 1256 SUPERFAMILY GAF domain-like 515 692 - -
Cre08g0848 1256 Gene3D PAS domain 181 428 - -
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 181 293 IPR035965 -
Cre08g0848 1256 Pfam His Kinase A (phospho-acceptor) domain 1001 1061 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0848 1256 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1112 1222 IPR003594 -
Cre08g0848 1256 FunFam Phytochrome 719 850 - -
Cre08g0848 1256 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 325 497 IPR016132 -
Cre08g0848 1256 SMART HisKA_10 1000 1064 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 425 446 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 537 557 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 655 673 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 818 835 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 726 742 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 838 858 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 745 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 340 359 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 240 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 622 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PANTHER OS08G0260000 PROTEIN 108 1101 - -
Cre08g0848 1256 Pfam PAS fold 176 292 IPR013654 GO:0006355(InterPro)
Cre08g0848 1256 Coils Coil 504 524 - -
Cre08g0848 1256 CDD PAS 867 978 IPR000014 -
Cre08g0848 1256 CDD HATPase_Phy-like 1111 1222 IPR044767 -
Cre08g0848 1256 ProSitePatterns Phytochrome chromophore attachment site signature. 425 434 IPR013516 -
Cre08g0848 1256 Gene3D PAS domain 870 984 - -
Cre08g0848 1256 FunFam Phytochrome 512 643 - -
Cre08g0848 1256 SUPERFAMILY GAF domain-like 305 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0625 Cre-Chr2:3173623 Cre08g0848 Cre-Chr8:21571415 0.00E+00 dispersed
Cre05g0804 Cre-Chr5:7106237 Cre08g0848 Cre-Chr8:21571415 0.00E+00 dispersed
Cre08g0848 Cre-Chr8:21571415 Cre08g0851 Cre-Chr8:21611564 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0848 K12120 - csv:101208491 2155.95