Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0848 ATGCTACCCAACGTGGCCTTCAGTGCCCCTGAGCCTCGACCCACGCTACATGTAATACATGTTTGGAGCATCACAATGCTTGAGCATAGCATCGTGACACTACCTTATTTGGTGCTCTCAGTGGTGTCAGAACGAACCGGATGGCCCACTCTGCTCCCCTACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACATGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATCGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCGGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGGAGGGGATGCATTTCTCCTTTGTCCCTGTGGAGATTTTAATTCCTCATATTTGA 3771 42.38 MLPNVAFSAPEPRPTLHVIHVWSITMLEHSIVTLPYLVLSVVSERTGWPTLLPYPVRPYGDPRRTFFFFHHRQATVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDMRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEEGMHFSFVPVEILIPHI 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21571415 21579917 - CrPI670011_08g008480.1 Cre08g0848 505766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0848 1256 Gene3D PAS domain 718 855 - -
Cre08g0848 1256 Gene3D - 512 685 IPR043150 -
Cre08g0848 1256 MobiDBLite consensus disorder prediction 106 126 - -
Cre08g0848 1256 Pfam Phytochrome region 520 694 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1058 1219 IPR036890 -
Cre08g0848 1256 ProSiteProfiles Histidine kinase domain profile. 1007 1226 IPR005467 -
Cre08g0848 1256 SMART gaf_1 325 517 IPR003018 GO:0005515(InterPro)
Cre08g0848 1256 Pfam PAS fold 856 978 IPR013767 GO:0006355(InterPro)
Cre08g0848 1256 Pfam PAS fold 726 840 IPR013767 GO:0006355(InterPro)
Cre08g0848 1256 ProSiteProfiles PAS repeat profile. 723 793 IPR000014 -
Cre08g0848 1256 Gene3D - 1063 1228 IPR036890 -
Cre08g0848 1256 NCBIfam PAS domain S-box protein 730 846 IPR000014 -
Cre08g0848 1256 ProSiteProfiles PAS repeat profile. 856 908 IPR000014 -
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 870 976 IPR035965 -
Cre08g0848 1256 SMART pas_2 725 791 IPR000014 -
Cre08g0848 1256 SMART pas_2 855 924 IPR000014 -
Cre08g0848 1256 SMART HKATPase_4 1112 1224 IPR003594 -
Cre08g0848 1256 CDD PAS 734 840 IPR000014 -
Cre08g0848 1256 Gene3D - 306 668 IPR029016 -
Cre08g0848 1256 Pfam GAF domain 328 506 IPR003018 GO:0005515(InterPro)
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 729 836 IPR035965 -
Cre08g0848 1256 SUPERFAMILY GAF domain-like 515 692 - -
Cre08g0848 1256 Gene3D PAS domain 181 428 - -
Cre08g0848 1256 SUPERFAMILY PYP-like sensor domain (PAS domain) 181 293 IPR035965 -
Cre08g0848 1256 Pfam His Kinase A (phospho-acceptor) domain 1001 1061 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0848 1256 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1112 1222 IPR003594 -
Cre08g0848 1256 FunFam Phytochrome 719 850 - -
Cre08g0848 1256 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 325 497 IPR016132 -
Cre08g0848 1256 SMART HisKA_10 1000 1064 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 425 446 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 537 557 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 655 673 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 818 835 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 726 742 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 838 858 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 745 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 340 359 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 240 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PRINTS Phytochrome signature 622 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0848 1256 PANTHER OS08G0260000 PROTEIN 108 1101 - -
Cre08g0848 1256 Pfam PAS fold 176 292 IPR013654 GO:0006355(InterPro)
Cre08g0848 1256 Coils Coil 504 524 - -
Cre08g0848 1256 CDD PAS 867 978 IPR000014 -
Cre08g0848 1256 CDD HATPase_Phy-like 1111 1222 IPR044767 -
Cre08g0848 1256 ProSitePatterns Phytochrome chromophore attachment site signature. 425 434 IPR013516 -
Cre08g0848 1256 Gene3D PAS domain 870 984 - -
Cre08g0848 1256 FunFam Phytochrome 512 643 - -
Cre08g0848 1256 SUPERFAMILY GAF domain-like 305 504 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0848 K12120 - - csv:101208491 2155.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0625 Cre-Chr2:3173623 Cre08g0848 Cre-Chr8:21571415 0.00E+00 dispersed
Cre05g0804 Cre-Chr5:7106237 Cre08g0848 Cre-Chr8:21571415 0.00E+00 dispersed
Cre08g0848 Cre-Chr8:21571415 Cre08g0851 Cre-Chr8:21611564 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0323 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.0 0.0e+00 1443.7
Cre11g0603 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.6
Cre09g1861 . 24 971 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1299.6
Cre02g0608 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.6 1.9e-277 952.6
Cre06g0986 . 138 1079 Histidine Kinase Gene Family AT2G01830 54.0 2.0e-274 942.6
Cre02g1268 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 3.8e-265 911.8
Cre05g1767 . 1 998 Histidine Kinase Gene Family AT5G10720 57.4 1.2e-291 999.6
Cre08g0848 . 108 1227 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1833.5
Cre08g0851 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.3 0.0e+00 1610.5
Cre02g0625 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Cre05g0804 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.5
Cre05g0804 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1671.4
Cre03g1005 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1236.5
Cre08g0848 . 128 1161 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cre02g0625 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.5
Cre08g0851 . 22 1075 Histidine Kinase Gene Family AT2G18790 50.8 3.9e-308 1054.7
Cre02g0625 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.2
Cre05g0804 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1150.2
Cre08g0848 . 116 1221 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1118.6
Cre05g0804 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1705.6
Cre03g1005 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1274.6
Cre08g0848 . 115 1222 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.6
Cre02g0625 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1118.6
Cre03g1005 . 15 1113 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1361.7
Cre05g0804 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56