Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0849 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCGGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGCCCTTCAGCTGCCGCCGCCCGTTCCCTGATCCACGGTTGCCAACGCCCGCAGTTTGAGATTCGTTTTGCTCTTTCTTTCCTTGATCTCGGCTTTTTCTCAATCGAAATTTTTGTTCTGCATACCTCATCGTCTTCTCCCATTCCTTCGCCCATCTCTCTCCTCCTCTCTCTCTCTCTGTGTGACTACTCAGAAAAAAGACTATGCAGGATTATGGTTGGAGTTGAATATATAAGAAGAAAGAGAACTTCCAAATGGGTTGGAGTTAGATTTGACAATTTAACAACTCCTTGA 1185 46.84 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTSPSAAAARSLIHGCQRPQFEIRFALSFLDLGFFSIEIFVLHTSSSSPIPSPISLLLSLSLCDYSEKRLCRIMVGVEYIRRKRTSKWVGVRFDNLTTP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21595971 21600946 + CrPI670011_08g008490.1 Cre08g0849 505767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0849 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
Cre08g0849 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 253 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre08g0849 394 MobiDBLite consensus disorder prediction 130 150 - -
Cre08g0849 394 MobiDBLite consensus disorder prediction 104 125 - -
Cre08g0849 394 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Cre08g0849 394 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Cre08g0849 394 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Cre08g0849 394 Coils Coil 224 244 - -
Cre08g0849 394 CDD bHLH_AtBPE_like 167 252 - -
Cre08g0849 394 MobiDBLite consensus disorder prediction 86 165 - -
Cre08g0849 394 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
Cre08g0849 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2524 Cre-Chr6:32895877 Cre08g0849 Cre-Chr8:21595971 3.20E-65 dispersed
Cre08g0849 Cre-Chr8:21595971 Cre09g1800 Cre-Chr9:36444904 6.80E-34 dispersed
Cre08g0849 Cre-Chr8:21595971 Cre02g0851 Cre-Chr2:5344030 1.20E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54176 PF00010 HLH 3.80E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0849 - - - 0.0