Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0851 ATGTCATCAACAGGTAGAACAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCATGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTGCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGTGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTACATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCACATGGATTCCACTGGTTTAACTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCCGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCAGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACCGGACGCTCTGTTCACAAAGCCATTGGCAAGCATTTACTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTGTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTGTGTGTTAATAAGATATTAGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGATAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGCCCAACTTACGGTTTCAACAAATTTGACTAAACATCATTTACAAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGAAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATTCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCTGCTCATAACTTAAGAACATAA 3438 42.2 MSSTGRTSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTTNPTAAPPPAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGMDLRAIFTNPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLTTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGRSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIESGSISVIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCDRTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLISVNYAPTGAQLTVSTNLTKHHLQNSLHLVHLEFRIRYVGEGIPESLLNEMFGNDYEDSTEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAAAHNLRT 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21611564 21618543 + CrPI670011_08g008510.1 Cre08g0851 505769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0851 1145 SUPERFAMILY GAF domain-like 206 413 - -
Cre08g0851 1145 ProSiteProfiles Histidine kinase domain profile. 920 1139 IPR005467 -
Cre08g0851 1145 PIRSF Phytochrome_conventional 7 1145 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cre08g0851 1145 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Cre08g0851 1145 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 Gene3D - 421 594 IPR043150 -
Cre08g0851 1145 SMART HKATPase_4 1026 1139 IPR003594 -
Cre08g0851 1145 ProSiteProfiles PAS repeat profile. 634 704 IPR000014 -
Cre08g0851 1145 FunFam Phytochrome 630 761 - -
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 195 IPR035965 -
Cre08g0851 1145 NCBIfam PAS domain S-box protein 641 757 IPR000014 -
Cre08g0851 1145 PANTHER OS08G0260000 PROTEIN 1 1015 - -
Cre08g0851 1145 Gene3D - 957 1133 IPR036890 -
Cre08g0851 1145 SUPERFAMILY GAF domain-like 424 601 - -
Cre08g0851 1145 SMART pas_2 636 702 IPR000014 -
Cre08g0851 1145 SMART pas_2 766 836 IPR000014 -
Cre08g0851 1145 MobiDBLite consensus disorder prediction 1 26 - -
Cre08g0851 1145 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1135 IPR036890 -
Cre08g0851 1145 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cre08g0851 1145 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Cre08g0851 1145 Gene3D - 207 577 IPR029016 -
Cre08g0851 1145 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Cre08g0851 1145 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1137 IPR003594 -
Cre08g0851 1145 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Cre08g0851 1145 Coils Coil 413 433 - -
Cre08g0851 1145 CDD PAS 778 891 IPR000014 -
Cre08g0851 1145 Pfam PAS fold 637 751 IPR013767 GO:0006355(InterPro)
Cre08g0851 1145 Pfam PAS fold 767 891 IPR013767 GO:0006355(InterPro)
Cre08g0851 1145 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Cre08g0851 1145 Gene3D PAS domain 81 329 - -
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 889 IPR035965 -
Cre08g0851 1145 FunFam Phytochrome 421 550 - -
Cre08g0851 1145 Pfam Phytochrome region 429 603 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 CDD PAS 645 751 IPR000014 -
Cre08g0851 1145 Pfam His Kinase A (phospho-acceptor) domain 916 977 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 640 747 IPR035965 -
Cre08g0851 1145 Gene3D PAS domain 629 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0851 K12120 - - csv:101219585 1992.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0848 Cre-Chr8:21571415 Cre08g0851 Cre-Chr8:21611564 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0323 . 5 1214 Histidine Kinase Gene Family AT2G17820 64.0 0.0e+00 1443.7
Cre11g0603 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.6
Cre09g1861 . 24 971 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1299.6
Cre02g0608 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.6 1.9e-277 952.6
Cre06g0986 . 138 1079 Histidine Kinase Gene Family AT2G01830 54.0 2.0e-274 942.6
Cre02g1268 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 3.8e-265 911.8
Cre05g1767 . 1 998 Histidine Kinase Gene Family AT5G10720 57.4 1.2e-291 999.6
Cre08g0848 . 108 1227 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1833.5
Cre08g0851 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.3 0.0e+00 1610.5
Cre02g0625 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Cre05g0804 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.5
Cre05g0804 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1671.4
Cre03g1005 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1236.5
Cre08g0848 . 128 1161 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cre02g0625 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1075.5
Cre08g0851 . 22 1075 Histidine Kinase Gene Family AT2G18790 50.8 3.9e-308 1054.7
Cre02g0625 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.2
Cre05g0804 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1150.2
Cre08g0848 . 116 1221 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1118.6
Cre05g0804 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1705.6
Cre03g1005 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1274.6
Cre08g0848 . 115 1222 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1138.6
Cre02g0625 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1118.6
Cre03g1005 . 15 1113 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1361.7
Cre05g0804 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56