Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0851 ATGTCATCAACAGGTAGAACAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCATGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTGCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGTGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTACATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCACATGGATTCCACTGGTTTAACTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCCGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCAGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACCGGACGCTCTGTTCACAAAGCCATTGGCAAGCATTTACTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTGAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTGTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTGTGTGTTAATAAGATATTAGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGATAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGCCCAACTTACGGTTTCAACAAATTTGACTAAACATCATTTACAAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGAAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATTCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCTGCTCATAACTTAAGAACATAA 3438 42.2 MSSTGRTSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTTNPTAAPPPAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGMDLRAIFTNPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLTTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGRSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIESGSISVIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCDRTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLISVNYAPTGAQLTVSTNLTKHHLQNSLHLVHLEFRIRYVGEGIPESLLNEMFGNDYEDSTEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAAAHNLRT 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21611564 21618543 + CrPI670011_08g008510.1 Cre08g0851 505769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0851 1145 SUPERFAMILY GAF domain-like 206 413 - -
Cre08g0851 1145 ProSiteProfiles Histidine kinase domain profile. 920 1139 IPR005467 -
Cre08g0851 1145 PIRSF Phytochrome_conventional 7 1145 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cre08g0851 1145 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Cre08g0851 1145 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 Gene3D - 421 594 IPR043150 -
Cre08g0851 1145 SMART HKATPase_4 1026 1139 IPR003594 -
Cre08g0851 1145 ProSiteProfiles PAS repeat profile. 634 704 IPR000014 -
Cre08g0851 1145 FunFam Phytochrome 630 761 - -
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 195 IPR035965 -
Cre08g0851 1145 NCBIfam PAS domain S-box protein 641 757 IPR000014 -
Cre08g0851 1145 PANTHER OS08G0260000 PROTEIN 1 1015 - -
Cre08g0851 1145 Gene3D - 957 1133 IPR036890 -
Cre08g0851 1145 SUPERFAMILY GAF domain-like 424 601 - -
Cre08g0851 1145 SMART pas_2 636 702 IPR000014 -
Cre08g0851 1145 SMART pas_2 766 836 IPR000014 -
Cre08g0851 1145 MobiDBLite consensus disorder prediction 1 26 - -
Cre08g0851 1145 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1135 IPR036890 -
Cre08g0851 1145 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cre08g0851 1145 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Cre08g0851 1145 Gene3D - 207 577 IPR029016 -
Cre08g0851 1145 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Cre08g0851 1145 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1137 IPR003594 -
Cre08g0851 1145 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Cre08g0851 1145 Coils Coil 413 433 - -
Cre08g0851 1145 CDD PAS 778 891 IPR000014 -
Cre08g0851 1145 Pfam PAS fold 637 751 IPR013767 GO:0006355(InterPro)
Cre08g0851 1145 Pfam PAS fold 767 891 IPR013767 GO:0006355(InterPro)
Cre08g0851 1145 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Cre08g0851 1145 Gene3D PAS domain 81 329 - -
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 889 IPR035965 -
Cre08g0851 1145 FunFam Phytochrome 421 550 - -
Cre08g0851 1145 Pfam Phytochrome region 429 603 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cre08g0851 1145 CDD PAS 645 751 IPR000014 -
Cre08g0851 1145 Pfam His Kinase A (phospho-acceptor) domain 916 977 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre08g0851 1145 SUPERFAMILY PYP-like sensor domain (PAS domain) 640 747 IPR035965 -
Cre08g0851 1145 Gene3D PAS domain 629 765 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0848 Cre-Chr8:21571415 Cre08g0851 Cre-Chr8:21611564 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0851 K12120 - csv:101219585 1992.24