Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0864 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAGCGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGGAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGTACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTTTCGCCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGTGAGTCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAATTTTTTCATATTGCTGGACTTGGTGGAATCAACAAATCCGTATTCTCCTGTTTCGTGTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGCATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGGTGA 1230 48.86 MSGSETGVITSREPFSVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWKFFHIAGLGGINKSVFSCFVSLLRCFVKGKGKRIRHWEIVMAVLPLGIRSR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21782933 21792077 + CrPI670011_08g008640.1 Cre08g0864 505782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0864 409 MobiDBLite consensus disorder prediction 72 159 - -
Cre08g0864 409 MobiDBLite consensus disorder prediction 122 142 - -
Cre08g0864 409 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Cre08g0864 409 MobiDBLite consensus disorder prediction 320 349 - -
Cre08g0864 409 MobiDBLite consensus disorder prediction 1 23 - -
Cre08g0864 409 MobiDBLite consensus disorder prediction 315 349 - -
Cre08g0864 409 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Cre08g0864 409 CDD DUF296 171 285 IPR005175 -
Cre08g0864 409 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Cre08g0864 409 Gene3D - 172 307 - -
Cre08g0864 409 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
Cre08g0864 409 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2010 Cre-Chr2:33570418 Cre08g0864 Cre-Chr8:21782933 7.60E-40 dispersed
Cre06g1146 Cre-Chr6:5322030 Cre08g0864 Cre-Chr8:21782933 5.00E-62 dispersed
Cre08g0864 Cre-Chr8:21782933 Cre11g2294 Cre-Chr11:34578089 1.30E-91 dispersed
Cre08g0864 Cre-Chr8:21782933 Cre10g0427 Cre-Chr10:3144026 8.00E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0864 - - - 0.0