Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0873 ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGCAGGGAAAGTAGAAGGAGGCCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCTCTCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTTTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCGAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCGAATGTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCCATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAAGCCCCACAGGTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTGCATTTTGTCGCATGCATAACCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATCTCCAGATGGTTTCAGCCATGGCATTGGAAAACTTATCTCTAGAGTCCAAAAATTTGACTCAGTTGCCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACGTGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAAGGCAAGGCAGTGGACAAATTGGTAGCCCTTTTAGATCACACAAGTGAGAAGGTCGTTGAGGCAGCACTTGCGGCACTATCTACTTTATTGGACGATGGGGTCGATGTTGAGAAGGGGGTGGACATTTTGCACAATGTAGGAGGGGTTCAGCCTATATTTGATGTGTTGCTTGAAAACCGTACAGAGAATCTAATGAGAAGGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGACAACATTGCAATGGAATTCTCGAATAATCCAAAGGTAAGTACAGCACTTGTTGATGCCTTCCAGCATGGTGACAACAAAACCAGGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTCCCTAATCCTAGTAATATGGGATAA 2520 44.21 MCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGSPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNVLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIRSSGAIISLVQFIEAPQVDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALAFCRMHNLAALFIELLQSNGLDNLQMVSAMALENLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVDILHNVGGVQPIFDVLLENRTENLMRRAVWTVERLLRTDNIAMEFSNNPKVSTALVDAFQHGDNKTRQIAERALRHVDKLPNFSNIFPNPSNMG 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21852984 21864508 - CrPI670011_08g008730.1 Cre08g0873 505791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0873 839 Coils Coil 275 295 - -
Cre08g0873 839 SMART Ubox_2 55 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g0873 839 CDD RING-Ubox_PUB 53 110 IPR045210 -
Cre08g0873 839 Gene3D - 600 830 IPR011989 -
Cre08g0873 839 Gene3D - 130 309 IPR011989 -
Cre08g0873 839 Pfam U-box domain 54 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g0873 839 SUPERFAMILY ARM repeat 153 467 IPR016024 -
Cre08g0873 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 129 IPR013083 -
Cre08g0873 839 ProSiteProfiles U-box domain profile. 51 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g0873 839 SMART arm_5 369 414 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 203 243 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 161 201 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 740 782 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 470 510 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 329 368 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 695 736 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Cre08g0873 839 SUPERFAMILY RING/U-box 40 133 - -
Cre08g0873 839 Gene3D - 334 510 IPR011989 -
Cre08g0873 839 SUPERFAMILY ARM repeat 473 824 IPR016024 -
Cre08g0873 839 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 832 IPR052608 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2512 Cre-Chr5:36519747 Cre08g0873 Cre-Chr8:21852984 5.00E-114 dispersed
Cre08g0873 Cre-Chr8:21852984 Cre11g1810 Cre-Chr11:29702577 7.90E-16 dispersed
Cre02g1342 Cre-Chr2:19492889 Cre08g0873 Cre-Chr8:21852984 1.70E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0873 - - - 0.0