Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0879 ATGAGTTGCTTTTTTTGTGTTACTCCTCGTACTCAGGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATCGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTTGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGGTATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTCGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAAATGACACCCATGCCCAGGAATCAGATCCCTGAAATTGCTAAACTTCTGTTTGGAGGTTGCTGTATAGAAGTTGCTGAAAAAGCTATGTGCATAGACATGTGTGAAGCGTGTTAG 1149 44.47 MSCFFCVTPRTQDGSRVESDSRVRFESRHSVNSSGTWRGKEGESNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEMTPMPRNQIPEIAKLLFGGCCIEVAEKAMCIDMCEAC 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21917162 21921109 + CrPI670011_08g008790.1 Cre08g0879 505797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0879 382 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0879 382 PANTHER OS07G0668900 PROTEIN 34 348 - -
Cre08g0879 382 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Cre08g0879 382 SMART serkin_6 71 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0879 382 FunFam Serine/threonine-protein kinase PBS1 147 359 - -
Cre08g0879 382 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0879 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0879 382 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Cre08g0879 382 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524(InterPro)
Cre08g0879 382 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Cre08g0879 382 Gene3D Transferase(Phosphotransferase) domain 1 147 355 - -
Cre08g0879 382 CDD STKc_IRAK 77 345 - -
Cre08g0879 382 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0879 Cre-Chr8:21917162 Cre11g2267 Cre-Chr11:34447006 4.40E-155 dispersed
Cre10g1853 Cre-Chr10:33120983 Cre08g0879 Cre-Chr8:21917162 1.40E-58 dispersed
Cre08g0879 Cre-Chr8:21917162 Cre08g0881 Cre-Chr8:21924314 2.60E-25 proximal
Cre11g2237 Cre-Chr11:34151206 Cre08g0879 Cre-Chr8:21917162 2.70E-64 wgd
Cre02g0678 Cre-Chr2:3742944 Cre08g0879 Cre-Chr8:21917162 3.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64335 PF00069 Pkinase 3.90E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0879 - - - 0.0