Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0912 ATGATGAACAATAATCCCGACCTCTCCCAAACTTCCGGCGCCGGCGACACCAAGTACAGAGGAGTACGGCGGCGGAAATGGGGAAAATGGGTTGCGGAAATCCGTCTCCCCAATAGCCGCGACCGTATCTGGCTGGGTTCTTACGACTCGCCAGAGAAAGCTGCCCGAGCTTTTGACGCTGCCCTTTTCTGCCTCCGTGGACCTCACGCCAAGTTTAACTTCCCTGACCAACCACTGCCCGACATTCTCAACGCTCACTCCCTCACTGCCCATCAGATCCAAGAATTGGCTGCGAAGTTCGCTAATGAGTATCATCATCAAAACGACGACGTTGTAGTACCTCCTCCACCTACTGAGGACAAATGTGGAAATTCACCTTCCTCCTCCAACGCTACTACTAATAATTATAACAATATGGATTGGTCTTTCCTTGATGCCATTCATGACGATGCCCTTCCTCATTCTTCTTCTTCTTCCTCCAGTTTCTTTCCTCTTTACAATGACCATTTTGATAATATCTTAACCAATGATTTTTACCAATCCACCAACAACGACCTTTACGACGCCGTTTCGGTTAGTGATGACGTTGACGACACTTTCTCCAATCAACCCTTTCTTTGGAATTTTTAA 630 47.46 MMNNNPDLSQTSGAGDTKYRGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGPHAKFNFPDQPLPDILNAHSLTAHQIQELAAKFANEYHHQNDDVVVPPPPTEDKCGNSPSSSNATTNNYNNMDWSFLDAIHDDALPHSSSSSSSFFPLYNDHFDNILTNDFYQSTNNDLYDAVSVSDDVDDTFSNQPFLWNF 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22275256 22275885 + CrPI670011_08g009120.1 Cre08g0912 505830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0912 209 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cre08g0912 209 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cre08g0912 209 CDD AP2 17 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 Pfam AP2 domain 17 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0912 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 153 IPR051032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0912 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1758 Cre-Chr5:29369172 Cre08g0912 Cre-Chr8:22275256 1.40E-32 dispersed
Cre08g0510 Cre-Chr8:17583473 Cre08g0912 Cre-Chr8:22275256 2.30E-17 dispersed
Cre08g0912 Cre-Chr8:22275256 Cre08g1555 Cre-Chr8:28203138 2.00E-21 dispersed
Cre08g0912 Cre-Chr8:22275256 Cre03g1760 Cre-Chr3:34460432 5.20E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g185 . Blo12g01035 . Bda03g00119 . . . . . . Cma01g01691 . Car09g00328 . Sed11g0856 . . Bhi04g01537 Tan02g1566 Cmetu03g1197 . Hepe08g1454 . Lcy13g2235 Cla05g01643 Cam05g1753 Cec05g1762 Cco05g1818 Clacu05g1744 Cmu05g1629 Cre05g1758 . . Cone17ag0957 Cone20ag0301 Lsi04g01372 . . . . . . . . Bpe04g00104 . . Sed13g1932 . Cmo09g00380 Cma09g00378 . Car01g01306 Car05g00886 . Cpe02g00301 Bhi09g03062 Tan01g3504 Cmetu07g1108 . Hepe01g1929 Mch11g0466 . Cla08g00976 Cam08g1424 Cec08g1002 Cco08g1125 Clacu08g1130 . Cre08g0912 Lsi08g00823 . Chy03g00645 Cme07g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002244 2 2 0 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54179 PF00847 AP2 1.30E-14 CL0081 Cre TF