Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0917 ATGCATGAGCCTGAGGAGGAAAATCGGGATGGTGCTCGCAAGAGAAGATTCAGTGAGCTGGAGGCCGGTGTTGCTTCTGATCAGTCCAATTTCAACCAACCCATGGACGAGGGCTTCATTCCTAGAAGGTACCAAATGGAGGTTTTTGAAGTTGGTATGAGGAGAAACACCATAGCCGTGTTGGAAACAGGTTCTGGAAAGACCATGATCGCAGTGATGCTTATGAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCAACTGTTCATTTGGTTCATCAGCAATTTAACGTTATTAAAGTTCATACTGATTTTGAAGTGGCGGAATATTATGGTGCCATGGGGGTCGATGATTGGAATATGAACCGCTGGGACAAGGAAACAAGCGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTAAGGAAGGCATATTTTAGACTGGGAAGCGTATGCTTGATGATCATTGATGAATGCCATCGTGCTACTGGAATTTTATCACAAATCTGA 549 43.53 MHEPEEENRDGARKRRFSELEAGVASDQSNFNQPMDEGFIPRRYQMEVFEVGMRRNTIAVLETGSGKTMIAVMLMKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVHTDFEVAEYYGAMGVDDWNMNRWDKETSERDVLVMTPQILLDALRKAYFRLGSVCLMIIDECHRATGILSQI 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22338068 22339815 - CrPI670011_08g009170.1 Cre08g0917 505835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0917 182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 182 IPR014001 -
Cre08g0917 182 SMART ultradead3 37 182 IPR014001 -
Cre08g0917 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 177 IPR027417 -
Cre08g0917 182 Gene3D - 37 178 IPR027417 -
Cre08g0917 182 PANTHER HELICASE WITH DEATH DOMAIN-RELATED 37 177 IPR051363 GO:0005737(PANTHER)
Cre08g0917 182 Pfam DEAD/DEAH box helicase 43 175 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0917 K11592 - - csv:101205038 322.398
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38