Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0939 ATGGAGGAAATGTCCCCGGCGGTTGTGGTGCCATTTAGGTTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATCACTACAGTTTCGGGTATGAATGACAAGTGTGAAGGAGTTCCATTGTCAGTTGTGTTATCTCAAAATAATAGCAGTTGGGTTCCGGCAGATGAGTCAATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTCTAGAGGGCGATCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATCCAAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTTGACTCTCAGATTGCGTGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACACGGTTCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTTTGTGGAAGAAGACCCGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTATGATGGTCATGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCTGTTGGCAATGTTAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTTAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTGTTGAGCCTGTTGCGCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCTGTGGATCATAAACCAAATAGAGAAGATGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCAAAAGACGACGAATGCCTCGTTCTAGCGAGTGATGGTTTATGGGATGTGATGACCAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTTTGGCACAAGAAGAATGGCGTTAGTTTGCCTTCTGAGAGGGGGGTGGGGATCGATCCCGCAGCCCAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTCCAAAAGGGCAGCAAAGACAACATTACGTCGCGAGGCCAAGAAGCGACTTCGTTGGCCGAGAAATTTCCAAGAACCGCCTCGTCGTTCAGGCCGTTGTTGCTTCGCCGACGGCCATTTGATGGAGTGGTAATATCTCAATCAATGGGAATCAAGAGAGAGAGTAAAAGCTCCGCTTCTGCAACATCACCGTGTGCTGATTTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAGAAGTACAGAGCTTGCCTCTCTGAGCATTTGGATGATAATAAGTTAAAGCGTTTCTTGGAAGAGGAAACGATTGTTCATTCTTCCATGAAAGCTGATGGGAGTCAAGAATCAAGATAG 1995 45.31 MEEMSPAVVVPFRLGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLTEVGSDDCKSSNGEEEVGITTVSGMNDKCEGVPLSVVLSQNNSSWVPADESISHGSEEDDSLSLEGDHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNPKDISSVEIAAKANIEETNVESLDSQIACSSSAAASLEEDVGDGLGTEACNNTVLQLPLEKKASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNVKDNCQELWRKAFTNCFLKVDAEIGGGPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITSRGQEATSLAEKFPRTASSFRPLLLRRRPFDGVVISQSMGIKRESKSSASATSPCADFRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDNKLKRFLEEETIVHSSMKADGSQESR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22579871 22584502 - CrPI670011_08g009390.1 Cre08g0939 505857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0939 664 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Cre08g0939 664 Gene3D - 226 538 IPR036457 -
Cre08g0939 664 PANTHER PROTEIN PHOSPHATASE 195 537 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Cre08g0939 664 Pfam Uncharacterised protein family (UPF0203) 587 648 IPR007918 -
Cre08g0939 664 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 589 639 - -
Cre08g0939 664 SUPERFAMILY PP2C-like 234 537 IPR036457 -
Cre08g0939 664 CDD PP2Cc 241 537 IPR001932 -
Cre08g0939 664 SMART PP2C_4 229 537 IPR001932 -
Cre08g0939 664 FunFam Protein phosphatase 2C 16 227 539 - -
Cre08g0939 664 Pfam Protein phosphatase 2C 262 536 IPR001932 -
Cre08g0939 664 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0419 Cre-Chr7:1859284 Cre08g0939 Cre-Chr8:22579871 5.00E-18 dispersed
Cre07g1746 Cre-Chr7:32925935 Cre08g0939 Cre-Chr8:22579871 9.90E-145 dispersed
Cre08g0939 Cre-Chr8:22579871 Cre11g1147 Cre-Chr11:9076453 1.10E-49 dispersed
Cre08g0939 Cre-Chr8:22579871 Cre03g0435 Cre-Chr3:2773531 3.60E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0939 K14497 - csv:101207918 998.808