Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0940 ATGTCTCCCTCCTCCTATCCACCCGAAGATGGGATTCCTTTGAACACCACGGCGGTGGCCATTGACAAGGATAAGAACAGCCATCACGCCGTCCGCTGGGCTATTGATCATCTGGTCATTAGCAATCCACTTATCATTCTCATCTACGTTAGGCATAAAGCTAATCAACATCAGGGAGCGAGCGATTCTGAAAATGGTGAAACTGATGCCCAGCAGCTGTTTATTCCTTATCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCGCTTGTTGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGTGCTTTAGCAAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAATAAAAACTGCCCCAGAATTTTGTTCTGTTTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCACGCCACCAAGACAACCGTCGCCGCTTGGAGTTCAGCCAAATGTTCAACCAGATAGCAGCAACGAACCGGAAAATGGAGCCAAAGGGCAACCAGCAAAGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCGCTGAAAGGAATAGTGGTGCAAAACCAGCAAAAGCGTTGACCCGTGAGAGGCCAAAAACTTCTCCGACTAATATATCAATGGAAAATATAGAGGTTCCAAATCGAGGGTCTAGGTCTTCATTTAGTCGTGATTCAATATCTGATGACAATATGCTGACTGCACAGATGGCCTTTGGTTCAATGGACGTGACTGCTCAAAATTTAGATTTCAGTGGCTCAAATTTGTCAGTGGACTCTGCTTCCACACAATCTACTCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAAGCCAGACGAGAGGCAGAAGAGAAAAAAAGAGCATTGAATGCTCTAGCTCAGAATGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATACGGTCCTGTTTATGGTGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTGGTATATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCTCTCCTTTTTCTTCACCAAGCAAAGCCAGAACCGCTCGTTCATAGGGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGATTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGGCAGTTAACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTTTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCACTGGAGGAGGCCATAAATTTTGCAAACTTGGCGTTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAAAGCCGAAGTAACTTCCCACGCTCTGCTGCATCAAGTTCCAGTTCAAGGCCGCAGTCATCAAATGAGGATTCCAGAATTCTGATCGATCTTTGTAACGAGGGAATTTTCAGGAAGGAATTGAGGAGCCCAGGTTGGGAAGAAAAGTATAAAGCAAGCATGAACAAGAGGATTAAAGTGCAAGAATTATACAAGGAGATGGGAATCCACATAAAGGTTGATTATGTTTTCAGAAAGGTATAA 2370 44.51 MSPSSYPPEDGIPLNTTAVAIDKDKNSHHAVRWAIDHLVISNPLIILIYVRHKANQHQGASDSENGETDAQQLFIPYRGYCARKGVQLKEVVLDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSIIKTAPEFCSVYVISKGKIISARAALRPVANTATPPRQPSPLGVQPNVQPDSSNEPENGAKGQPAKEGWKSAGTERMLAERNSGAKPAKALTRERPKTSPTNISMENIEVPNRGSRSSFSRDSISDDNMLTAQMAFGSMDVTAQNLDFSGSNLSVDSASTQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFANLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRSNFPRSAASSSSSRPQSSNEDSRILIDLCNEGIFRKELRSPGWEEKYKASMNKRIKVQELYKEMGIHIKVDYVFRKV 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22594997 22599613 + CrPI670011_08g009400.1 Cre08g0940 505858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0940 789 CDD STKc_IRAK 439 699 - -
Cre08g0940 789 ProSiteProfiles Protein kinase domain profile. 433 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0940 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0940 789 MobiDBLite consensus disorder prediction 703 733 - -
Cre08g0940 789 PANTHER OS02G0152300 PROTEIN 18 719 IPR051348 -
Cre08g0940 789 MobiDBLite consensus disorder prediction 715 733 - -
Cre08g0940 789 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Cre08g0940 789 Gene3D Phosphorylase Kinase; domain 1 402 505 - -
Cre08g0940 789 SMART serkin_6 433 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0940 789 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 405 505 - -
Cre08g0940 789 MobiDBLite consensus disorder prediction 167 242 - -
Cre08g0940 789 Gene3D Transferase(Phosphotransferase) domain 1 506 720 - -
Cre08g0940 789 Pfam Protein tyrosine and serine/threonine kinase 437 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0940 789 Coils Coil 359 414 - -
Cre08g0940 789 MobiDBLite consensus disorder prediction 180 195 - -
Cre08g0940 789 Gene3D HUPs 14 152 IPR014729 -
Cre08g0940 789 FunFam U-box domain-containing protein 51 506 706 - -
Cre08g0940 789 CDD STK_N 16 153 - -
Cre08g0940 789 Pfam Universal stress protein family 19 148 IPR006016 -
Cre08g0940 789 SUPERFAMILY Protein kinase-like (PK-like) 416 691 IPR011009 -
Cre08g0940 789 Coils Coil 299 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0940 Cre-Chr8:22594997 Cre09g0072 Cre-Chr9:967500 2.70E-183 dispersed
Cre05g2803 Cre-Chr5:38749871 Cre08g0940 Cre-Chr8:22594997 3.40E-207 transposed
Cre08g1195 Cre-Chr8:25226650 Cre08g0940 Cre-Chr8:22594997 2.70E-199 transposed
Cre11g1565 Cre-Chr11:25312035 Cre08g0940 Cre-Chr8:22594997 4.90E-183 transposed
Cre11g2308 Cre-Chr11:34672809 Cre08g0940 Cre-Chr8:22594997 1.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64340 PF07714 PK_Tyr_Ser-Thr 2.20E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0940 - - - 0.0