Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0946 ATGGAGGAAGAGGAAACCGGAGAGGCTATGCGGCCGGAATTTCCGACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 52.01 MEEEETGEAMRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22639095 22639517 + CrPI670011_08g009460.1 Cre08g0946 505864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0946 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 106 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre08g0946 140 MobiDBLite consensus disorder prediction 90 114 - -
Cre08g0946 140 MobiDBLite consensus disorder prediction 99 114 - -
Cre08g0946 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
Cre08g0946 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cre08g0946 140 SUPERFAMILY Histone-fold 13 91 IPR009072 GO:0046982(InterPro)
Cre08g0946 140 MobiDBLite consensus disorder prediction 121 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0946 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.8e-89 323.6
Cre09g1461 . 102 245 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.3e-53 206.1
Cre09g1461 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 87.9 4.5e-46 181.8
Cre06g2647 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.0e-43 171.0
Cre09g1461 . 102 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.3
Cre06g2647 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.0e-51 199.5
Cre06g2647 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 4.0e-38 155.2
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 8.0e-81 297.4
Cre09g1461 . 102 253 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cre09g1461 . 66 233 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.9e-65 245.4
Cre06g2647 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.5e-50 194.9
Cre11g1741 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 5.4e-60 228.4
Cre08g0946 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.7 2.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54182 PF00808 CBFD_NFYB_HMF 1.40E-19 CL0012 Cre TF