Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0956 ATGGACGACGGAGCAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCACCACCGCAGCACGACCCGGCGGCGCACCAGCAGCATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAATATCTTTGGTAACATCTTCGAAGTTACGGCCAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCCGAGACCAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCAATTAGGGATATCATACCTCCACCTCTTAGGGAAACATTCAATGATGTTTATATAGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCGGAGGAGCATTGTCAGTATTTCCTGTACCAGATTCTCCGTGGATTGAAGTACATACATTCAGCTAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGTGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCATTGTTTCCTGGTAGAGATCATGTGCATCAGTTGCGCTTGCTTTTGGAGCTGATTGGCACCCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAACTACCTCATTACCATCGTCAGTCATTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGATGCTCTTGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCGCTTACCGAGGAACAGATGAAAGAGCTGATCTATCTAGAGGCGCTTGCATTTAACCCCGAGTATCATCACCAATAA 1218 45.16 MDDGAASQPDDTVMSEAASVPPPQHDPAAHQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYLEALAFNPEYHHQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22718362 22725584 + CrPI670011_08g009560.1 Cre08g0956 505874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0956 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0956 405 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0956 405 MobiDBLite consensus disorder prediction 1 44 - -
Cre08g0956 405 SMART serkin_6 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0956 405 Gene3D Phosphorylase Kinase; domain 1 55 393 - -
Cre08g0956 405 ProSitePatterns MAP kinase signature. 107 210 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0956 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 65 390 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre08g0956 405 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
Cre08g0956 405 FunFam Mitogen-activated protein kinase 156 384 - -
Cre08g0956 405 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524(InterPro)
Cre08g0956 405 CDD STKc_TEY_MAPK 65 400 - -
Cre08g0956 405 SUPERFAMILY Protein kinase-like (PK-like) 77 365 IPR011009 -
Cre08g0956 405 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0956 405 FunFam Mitogen-activated protein kinase 57 166 - -
Cre08g0956 405 MobiDBLite consensus disorder prediction 29 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0516 Cre-Chr3:3701048 Cre08g0956 Cre-Chr8:22718362 6.50E-172 dispersed
Cre06g1109 Cre-Chr6:4984382 Cre08g0956 Cre-Chr8:22718362 1.80E-161 dispersed
Cre07g1403 Cre-Chr7:28935437 Cre08g0956 Cre-Chr8:22718362 2.30E-92 dispersed
Cre08g0956 Cre-Chr8:22718362 Cre09g2280 Cre-Chr9:42001456 6.10E-163 dispersed
Cre01g1537 Cre-Chr1:28587527 Cre08g0956 Cre-Chr8:22718362 2.80E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64341 PF00069 Pkinase 3.40E-73 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0956 K14512 - csv:101204301 801.586