Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0967 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCTCCAATCTCACCGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA 879 48.92 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFLQSHRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22830386 22835196 - CrPI670011_08g009670.1 Cre08g0967 505885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0967 292 Gene3D WRKY domain 123 189 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g0967 292 MobiDBLite consensus disorder prediction 1 26 - -
Cre08g0967 292 MobiDBLite consensus disorder prediction 84 102 - -
Cre08g0967 292 MobiDBLite consensus disorder prediction 51 120 - -
Cre08g0967 292 FunFam WRKY transcription factor 57 122 196 - -
Cre08g0967 292 MobiDBLite consensus disorder prediction 221 279 - -
Cre08g0967 292 SMART WRKY_cls 136 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g0967 292 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g0967 292 ProSiteProfiles WRKY domain profile. 131 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g0967 292 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g0967 292 MobiDBLite consensus disorder prediction 248 275 - -
Cre08g0967 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 231 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0903 Cre-Chr4:27684927 Cre08g0967 Cre-Chr8:22830386 3.30E-21 dispersed
Cre08g0937 Cre-Chr8:22569347 Cre08g0967 Cre-Chr8:22830386 4.60E-23 dispersed
Cre08g0967 Cre-Chr8:22830386 Cre10g1316 Cre-Chr10:26507672 2.50E-33 dispersed
Cre08g0967 Cre-Chr8:22830386 Cre06g1206 Cre-Chr6:5917369 1.60E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54183 PF03106 WRKY 8.80E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0967 - - - 0.0