Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0982 ATGAATTTGGAGCAAACCTTCCGGCGACGATCGGATCTGAGGCGAACTTCAGAGTTCAAGAGGGAACGAAGAAATGAGTGGGCTGGTGTACTCATAACCAAAAAAATTGGAAAGAATCCCATCAGGTCTCATCTGCTCAGTATCAGTCCACCTCTCACCTGCCTGCTAAATCTGGAATTTCTTGTAGATTTTCACTTTCCCATTGATCCTTTTTTGATTTCTGCATCTGGGTCTTTTGGTTATGGCGTTCCAAGTGTTTTCATCCACACAATTGCTTTGAAAATAGGTTACTTCCCTTTCATTTCTGTTGCTTTATCTGGGTTTCCTTTCGTTTTACCGTTCAGTAGAAGATTTATGTTTGTAGAAATCGAGGCATTGGCTGCTTCAATTTTCGACCCTCTGCTGCTAATAGCAGGGGACTACGATCCATGGATGTCTCAAGAGGAAGGGAACTCGGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTCTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAGGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGACGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACTACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTGACAGCAGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1521 41.81 MNLEQTFRRRSDLRRTSEFKRERRNEWAGVLITKKIGKNPIRSHLLSISPPLTCLLNLEFLVDFHFPIDPFLISASGSFGYGVPSVFIHTIALKIGYFPFISVALSGFPFVLPFSRRFMFVEIEALAASIFDPLLLIAGDYDPWMSQEEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDYMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22943810 22949447 - CrPI670011_08g009820.1 Cre08g0982 505900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0982 506 Coils Coil 295 315 - -
Cre08g0982 506 Gene3D Magnesium transport protein CorA, transmembrane region 217 437 - -
Cre08g0982 506 Pfam Magnesium transporter MRS2-like 155 332 - -
Cre08g0982 506 CDD Mrs2_Mfm1p-like 148 503 IPR039204 -
Cre08g0982 506 Gene3D - 143 214 - -
Cre08g0982 506 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 143 503 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1415 Cre-Chr6:8444609 Cre08g0982 Cre-Chr8:22943810 1.20E-64 dispersed
Cre08g0982 Cre-Chr8:22943810 Cre10g1438 Cre-Chr10:28110223 1.00E-98 dispersed
Cre08g0982 Cre-Chr8:22943810 Cre07g0431 Cre-Chr7:1999281 1.60E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0982 K16075 - csv:101220835 610.912