Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0982 ATGAATTTGGAGCAAACCTTCCGGCGACGATCGGATCTGAGGCGAACTTCAGAGTTCAAGAGGGAACGAAGAAATGAGTGGGCTGGTGTACTCATAACCAAAAAAATTGGAAAGAATCCCATCAGGTCTCATCTGCTCAGTATCAGTCCACCTCTCACCTGCCTGCTAAATCTGGAATTTCTTGTAGATTTTCACTTTCCCATTGATCCTTTTTTGATTTCTGCATCTGGGTCTTTTGGTTATGGCGTTCCAAGTGTTTTCATCCACACAATTGCTTTGAAAATAGGTTACTTCCCTTTCATTTCTGTTGCTTTATCTGGGTTTCCTTTCGTTTTACCGTTCAGTAGAAGATTTATGTTTGTAGAAATCGAGGCATTGGCTGCTTCAATTTTCGACCCTCTGCTGCTAATAGCAGGGGACTACGATCCATGGATGTCTCAAGAGGAAGGGAACTCGGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTCTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAGGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGACGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACTACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTGACAGCAGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1521 41.81 MNLEQTFRRRSDLRRTSEFKRERRNEWAGVLITKKIGKNPIRSHLLSISPPLTCLLNLEFLVDFHFPIDPFLISASGSFGYGVPSVFIHTIALKIGYFPFISVALSGFPFVLPFSRRFMFVEIEALAASIFDPLLLIAGDYDPWMSQEEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDYMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22943810 22949447 - CrPI670011_08g009820.1 Cre08g0982 505900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0982 506 Coils Coil 295 315 - -
Cre08g0982 506 Gene3D Magnesium transport protein CorA, transmembrane region 217 437 - -
Cre08g0982 506 Pfam Magnesium transporter MRS2-like 155 332 - -
Cre08g0982 506 CDD Mrs2_Mfm1p-like 148 503 IPR039204 -
Cre08g0982 506 Gene3D - 143 214 - -
Cre08g0982 506 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 143 503 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0982 K16075 - - csv:101220835 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1415 Cre-Chr6:8444609 Cre08g0982 Cre-Chr8:22943810 1.20E-64 dispersed
Cre08g0982 Cre-Chr8:22943810 Cre10g1438 Cre-Chr10:28110223 1.00E-98 dispersed
Cre08g0982 Cre-Chr8:22943810 Cre07g0431 Cre-Chr7:1999281 1.60E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1438 . 82 486 MRS2 Gene Family AT1G16010 86.4 8.3e-190 660.2
Cre08g0982 . 150 506 MRS2 Gene Family AT1G16010 52.0 1.0e-99 360.9
Cre06g1415 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.8e-156 549.3
Cre07g0431 . 708 1080 MRS2 Gene Family AT5G64560 68.5 4.4e-131 464.9
Cre02g1047 . 14 495 MRS2 Gene Family AT3G19640 64.4 1.1e-155 547.0
Cre05g1128 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.8e-136 481.1
Cre02g0369 . 59 416 MRS2 Gene Family AT3G58970 71.5 9.2e-133 470.7
Cre08g0982 . 144 506 MRS2 Gene Family AT2G03620 67.5 1.7e-128 456.4
Cre10g1438 . 79 486 MRS2 Gene Family AT2G03620 54.9 2.5e-111 399.4
Cre06g1415 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.1e-127 453.4
Cre07g0431 . 708 1042 MRS2 Gene Family AT5G09690 63.4 5.8e-108 387.9
Cre10g1438 . 83 422 MRS2 Gene Family AT5G09690 50.6 8.1e-78 287.7
Cre06g1415 . 23 281 MRS2 Gene Family AT5G09720 69.1 8.0e-88 320.9
Cre07g0431 . 744 1002 MRS2 Gene Family AT5G09720 61.3 1.2e-75 280.4
Cre10g1438 . 82 486 MRS2 Gene Family AT1G80900 84.7 3.1e-184 641.7
Cre08g0982 . 151 506 MRS2 Gene Family AT1G80900 54.3 8.8e-99 357.8
Cre01g1187 . 16 436 MRS2 Gene Family AT5G22830 68.6 5.7e-149 524.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34