Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0985 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATATGATTTGACTTCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGTTGATGGAGAAGTTCTATATCGGCGTGCTTGATACATATCCCTCGGATAGCCTAGAACTTGAAACGAAACAAGTAGACGGTTATGCAGCTCGGTTTCAGGCCTTGACAAAGCAATACTGGAAGGCTCCTGTTGCAGTACTTGGTATTTCTGTGGTAGTTGGCTGTCTATACTTGCGCAAGAAGTGA 396 45.71 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGVLDTYPSDSLELETKQVDGYAARFQALTKQYWKAPVAVLGISVVVGCLYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22964277 22966105 + CrPI670011_08g009850.1 Cre08g0985 505903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0985 131 SMART Cyt_b5_2 8 81 IPR001199 -
Cre08g0985 131 Gene3D - 3 84 IPR036400 -
Cre08g0985 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cre08g0985 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cre08g0985 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cre08g0985 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cre08g0985 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cre08g0985 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Cre08g0985 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 83 IPR036400 -
Cre08g0985 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cre08g0985 131 PANTHER CYTOCHROME B5 6 129 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cre08g0985 131 FunFam Cytochrome b5 type B 3 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0985 K23490 - - csv:101220127 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0985 Cre-Chr8:22964277 Cre09g2485 Cre-Chr9:44142096 4.40E-22 dispersed
Cre08g0985 Cre-Chr8:22964277 Cre05g0427 Cre-Chr5:3865275 1.30E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24