Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0990 ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGGCATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAGTTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACACCATGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAACCTGAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCACAATGGATGTTGCTTTGA 723 39.97 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEVQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTPWDSSPNNLQYCRQPEDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23015602 23021414 + CrPI670011_08g009900.1 Cre08g0990 505908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0990 240 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0990 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g0990 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 Coils Coil 117 144 - -
Cre08g0990 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 FunFam MADS-box transcription factor 1 13 88 - -
Cre08g0990 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre08g0990 240 Pfam K-box region 86 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0990 240 Coils Coil 150 173 - -
Cre08g0990 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0990 240 MobiDBLite consensus disorder prediction 216 240 - -
Cre08g0990 240 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1952 Cre-Chr7:34922361 Cre08g0990 Cre-Chr8:23015602 1.00E-64 dispersed
Cre08g0053 Cre-Chr8:1257843 Cre08g0990 Cre-Chr8:23015602 6.40E-31 dispersed
Cre08g0990 Cre-Chr8:23015602 Cre09g2199 Cre-Chr9:41090544 2.70E-33 dispersed
Cre08g0990 Cre-Chr8:23015602 Cre08g0991 Cre-Chr8:23029370 8.00E-46 tandem
Cre01g1496 Cre-Chr1:28185534 Cre08g0990 Cre-Chr8:23015602 1.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54184 PF01486 K-box 2.00E-27 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0990 K09264 - csv:101220998 416.387