Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0991 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGAAGGCAGCAACTTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTCGAATACTACAGACTCAAGTCCAAAGTCGAACTTTTACAAAGAAACAACAGTCACTATATGGGAGAAGATTTGGATTCATTGAGTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCAAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTCCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAATGCCCTATTGGCTAAGCAGATAAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTTTTATTCCCACCACCTACTCATCCCTCTCTAAACATTGGGCTTGCAAGTTTTGAAGGTCACCAATGA 672 39.73 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPPPTHPSLNIGLASFEGHQ 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23029370 23035307 + CrPI670011_08g009910.1 Cre08g0991 505909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0991 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre08g0991 223 Coils Coil 127 147 - -
Cre08g0991 223 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cre08g0991 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0991 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g0991 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0991 223 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0991 223 Coils Coil 153 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1496 Cre-Chr1:28185534 Cre08g0991 Cre-Chr8:23029370 9.60E-71 dispersed
Cre07g1953 Cre-Chr7:34944622 Cre08g0991 Cre-Chr8:23029370 9.10E-61 dispersed
Cre08g0991 Cre-Chr8:23029370 Cre09g2199 Cre-Chr9:41090544 2.20E-29 dispersed
Cre08g0990 Cre-Chr8:23015602 Cre08g0991 Cre-Chr8:23029370 8.00E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54185 PF01486 K-box 2.60E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0991 K09264 - csv:101219414 396.741