Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1000 ATGAGAACGGGGAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCGTAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACAACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCGAAAAAGCGGCTAAGAACATGA 999 44.54 MRTGKSNQDDEEYEEDELVAKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHSGRDILQDADITNKVPLPMSLEGNLHASIRSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSSHPAMANVGDLGSGDDSEQAKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23095961 23100786 - CrPI670011_08g010000.1 Cre08g1000 505918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1000 332 MobiDBLite consensus disorder prediction 297 332 - -
Cre08g1000 332 MobiDBLite consensus disorder prediction 44 62 - -
Cre08g1000 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Cre08g1000 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Cre08g1000 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Cre08g1000 332 FunFam BHLH domain class transcription factor 47 119 - -
Cre08g1000 332 MobiDBLite consensus disorder prediction 23 43 - -
Cre08g1000 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Cre08g1000 332 CDD bHLH_AtBIM_like 48 124 - -
Cre08g1000 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cre08g1000 332 MobiDBLite consensus disorder prediction 1 62 - -
Cre08g1000 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2399 Cre-Chr6:31877574 Cre08g1000 Cre-Chr8:23095961 1.80E-58 dispersed
Cre07g1959 Cre-Chr7:34992098 Cre08g1000 Cre-Chr8:23095961 4.60E-52 dispersed
Cre01g1490 Cre-Chr1:28152507 Cre08g1000 Cre-Chr8:23095961 8.90E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54186 PF00010 HLH 1.80E-13 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1000 - - - 0.0