Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1007 | ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCTCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA | 534 | 58.61 | MSSAHSPSSSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 23173289 | 23173822 | + | CrPI670011_08g010070.1 | Cre08g1007 | 505925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1007 | 177 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 15 | 176 | IPR044289 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
| Cre08g1007 | 177 | Pfam | Ring finger domain | 112 | 154 | IPR001841 | - | |
| Cre08g1007 | 177 | SUPERFAMILY | RING/U-box | 111 | 159 | - | - | |
| Cre08g1007 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 154 | IPR001841 | - | |
| Cre08g1007 | 177 | SMART | ring_2 | 112 | 153 | IPR001841 | - | |
| Cre08g1007 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 159 | IPR013083 | - | |
| Cre08g1007 | 177 | CDD | RING-H2_EL5-like | 112 | 154 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1144 | Cre-Chr4:30044273 | Cre08g1007 | Cre-Chr8:23173289 | 7.20E-25 | dispersed | |
| Cre05g0201 | Cre-Chr5:1968806 | Cre08g1007 | Cre-Chr8:23173289 | 2.20E-24 | dispersed | |
| Cre05g1071 | Cre-Chr5:9968709 | Cre08g1007 | Cre-Chr8:23173289 | 8.40E-23 | dispersed | |
| Cre07g1863 | Cre-Chr7:34022566 | Cre08g1007 | Cre-Chr8:23173289 | 6.40E-24 | dispersed | |
| Cre08g1007 | Cre-Chr8:23173289 | Cre10g1934 | Cre-Chr10:33995185 | 2.60E-25 | dispersed | |
| Cre08g1007 | Cre-Chr8:23173289 | Cre05g0161 | Cre-Chr5:1654112 | 4.30E-28 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1007 | - | - | - | 0.0 |