Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1007 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCTCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA 534 58.61 MSSAHSPSSSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 23173289 23173822 + CrPI670011_08g010070.1 Cre08g1007 505925
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1007 177 PANTHER RING-H2 FINGER PROTEIN ATL67 15 176 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Cre08g1007 177 Pfam Ring finger domain 112 154 IPR001841 -
Cre08g1007 177 SUPERFAMILY RING/U-box 111 159 - -
Cre08g1007 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cre08g1007 177 SMART ring_2 112 153 IPR001841 -
Cre08g1007 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Cre08g1007 177 CDD RING-H2_EL5-like 112 154 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1144 Cre-Chr4:30044273 Cre08g1007 Cre-Chr8:23173289 7.20E-25 dispersed
Cre05g0201 Cre-Chr5:1968806 Cre08g1007 Cre-Chr8:23173289 2.20E-24 dispersed
Cre05g1071 Cre-Chr5:9968709 Cre08g1007 Cre-Chr8:23173289 8.40E-23 dispersed
Cre07g1863 Cre-Chr7:34022566 Cre08g1007 Cre-Chr8:23173289 6.40E-24 dispersed
Cre08g1007 Cre-Chr8:23173289 Cre10g1934 Cre-Chr10:33995185 2.60E-25 dispersed
Cre08g1007 Cre-Chr8:23173289 Cre05g0161 Cre-Chr5:1654112 4.30E-28 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1007 - - - 0.0