Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1009 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGAGGCCAACTTACTCTTACTATGGCTTCTGATTCTAGTGACAGATCAAAGGACAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGATTGAGAAAAAAAGCATACGTTCAACAGCTAGAGAGCAGTCGATTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGATCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAGGATCACAACCGTCAATTGAACGAATTGAGATCAGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATAACAAACTTGCAGCAATCATCGCAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACCCTCGAGGGCTTTATACGCCAAGCCGACAATTTGCGACAACAGACACTTCAACAAATGCACCGTATATTGACAACTCGTCAGTCTGCTCGTGCTCTTCTCGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAGAGAGTAA 1002 47.7 MATEGSPRTDISTDGDTDEKSRRPDRGQLTLTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23189625 23193503 - CrPI670011_08g010090.1 Cre08g1009 505927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1009 333 FunFam BZIP family transcription factor 47 96 - -
Cre08g1009 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1009 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1009 333 MobiDBLite consensus disorder prediction 11 26 - -
Cre08g1009 333 Coils Coil 67 94 - -
Cre08g1009 333 SMART brlzneu 44 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1009 333 Gene3D - 47 99 - -
Cre08g1009 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre08g1009 333 PANTHER TRANSCRIPTION FACTOR TGA9 25 333 - -
Cre08g1009 333 MobiDBLite consensus disorder prediction 1 50 - -
Cre08g1009 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1009 333 Coils Coil 124 144 - -
Cre08g1009 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1009 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2521 Cre-Chr2:38496260 Cre08g1009 Cre-Chr8:23189625 5.30E-89 dispersed
Cre05g2856 Cre-Chr5:39247209 Cre08g1009 Cre-Chr8:23189625 5.10E-142 dispersed
Cre08g0479 Cre-Chr8:16493460 Cre08g1009 Cre-Chr8:23189625 3.80E-115 dispersed
Cre08g1009 Cre-Chr8:23189625 Cre10g1750 Cre-Chr10:31911664 2.00E-124 dispersed
Cre08g1009 Cre-Chr8:23189625 Cre01g1119 Cre-Chr1:20413933 1.50E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54187 PF14144 DOG1 1.00E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1009 K14431 - csv:101213210 593.964