Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1022 ATGGCATCGGGCGCTTCTGATTTCAAGGTGCAGATACCAAGTAAGCCCCCGCCGCCACCTCCTCCGCCGCCGCCCTTCGCCACTGAGTTTTCAGAAAATTTTGACGAATTGAAGATTCCGTTCTTCAAATCGAGCTCTCGGAGGCCAAGAGGTGATACCTGTGTCGTCTCCGTCTTCGTGCTCCTCCATATTGTGGCGTTCATCGCCATGATGTTGGTTAATGACTGCTGGTCTAATTCTCATCAAGAATGTGCGTTTGGAGTACTCGGAAGGATGTCGTTTCAGCCGCTTGCGGAGAATCCTCTTCTTGGCCCTTCCGCTTCCACGCTAGAGAAGATGGGAGGTCTTCAGCGAAAGAGCCTGGCTGAATATCGACAAATTTGGCGTCTGTTTACATTTCCTTGTATGCATGCCGGACTCATTCACCTTGTGATTAATCTTAGCAGCGTAATCTTTGTAGGGATTCAATTAGAACTTGAGTATGGTCCAGTAAGGACTGGGATTATCTATCTACTCTCTGGTTATACTGGCACCTTGGTGGCTGCACTTTTTGTTCAAAACAGCCCGTCAGTTGGTTCATCTGGAGCTCTATTTGGTTTACTTGGAGCTATGATTTCTGGGATAATAAGGAACTGGAAACTTTACACTGATAGATTTTTAGCTCTGGGATCAGTTCTTGTTGTCTTCGCTATCAATTTCGGACTCGGTCTGCTACCTTATGTAGACAATTTTGCGAATGTTGGAGGCTTGGCATCGGGATTACTTCTCGGTTTCATGATTTTGTTCACTCTGCAGCATAGACAAGAAAAAGCTCAAACTAAAGGATACTCTTTCAGTTATAGTTTCAAGAATTATTTCAATTTGAAAATGAAACAGAAGCTGGACAAACCGATCCTGAGAAGCGGGTCTCTTCTTCTCTTTGCTCTTTTAATTTTCGGATCTCTAGTTGGAGTTATTTTTGAATTTGACTTGAACCAGTATTGCATATGGTGTCGTTATATCAACTGTGTTCCATTCGAGAAATGGCACTGCAAGGATGTGGCATTTTCTTGTGCGACAATGGTTAGCAATCAAGAACTGACATTGACATGCTTGTCTACTGGCAACTTCAAGGTATACCCTTTCACTGATATCTCCCCGTCGAGGATAAACGACTTGTGTGGTCTCATTTGTTCATAA 1179 43.94 MASGASDFKVQIPSKPPPPPPPPPPFATEFSENFDELKIPFFKSSSRRPRGDTCVVSVFVLLHIVAFIAMMLVNDCWSNSHQECAFGVLGRMSFQPLAENPLLGPSASTLEKMGGLQRKSLAEYRQIWRLFTFPCMHAGLIHLVINLSSVIFVGIQLELEYGPVRTGIIYLLSGYTGTLVAALFVQNSPSVGSSGALFGLLGAMISGIIRNWKLYTDRFLALGSVLVVFAINFGLGLLPYVDNFANVGGLASGLLLGFMILFTLQHRQEKAQTKGYSFSYSFKNYFNLKMKQKLDKPILRSGSLLLFALLIFGSLVGVIFEFDLNQYCIWCRYINCVPFEKWHCKDVAFSCATMVSNQELTLTCLSTGNFKVYPFTDISPSRINDLCGLICS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23389783 23392696 - CrPI670011_08g010220.1 Cre08g1022 505940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1022 392 SUPERFAMILY Formin homology 2 domain (FH2 domain) 16 25 - -
Cre08g1022 392 MobiDBLite consensus disorder prediction 1 27 - -
Cre08g1022 392 MobiDBLite consensus disorder prediction 12 27 - -
Cre08g1022 392 SUPERFAMILY Rhomboid-like 54 266 IPR035952 -
Cre08g1022 392 PANTHER RHOMBOID-RELATED 44 345 IPR002610 GO:0006508(InterPro)|GO:0016020(InterPro)
Cre08g1022 392 Pfam Rhomboid family 125 260 IPR022764 GO:0004252(InterPro)|GO:0016020(InterPro)
Cre08g1022 392 Gene3D - 51 265 IPR035952 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1022 Cre-Chr8:23389783 Cre10g2224 Cre-Chr10:36695116 1.60E-64 dispersed
Cre08g1022 Cre-Chr8:23389783 Cre03g0456 Cre-Chr3:2977491 2.40E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g343 . . . . Bpe02g00087 . . Bma01g02631 Cmo05g00503 . . . . . . . . . . . . . . . Cla08g01086 Cam08g1538 Cec08g1112 Cco08g1239 Clacu08g1241 . Cre08g1022 . . . . . . . Cme03g01498 . . . . . . . . . . . . Cma05g00480 Car05g00428 . Cpe11g00420 . . . . . . . . . . . . . . . Lsi08g00943 . Chy03g01009 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012013 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 29