Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1025 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCGCAATCCAAGTTCGATGAGAAAACCGGGACGTCTCTTGTAAATGGTGCTCATGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAATTTCATAAAAAAATATGTTCAATGCTATGGATGTGGAAACCCTGAGACTGAGATAATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACGTTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCGAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGACTTAAGGAGGGAGAGGTTGCCGATGAGGAGCAGAAGAAAATAAAGAAGGATTCGCTAAAGAAGAAAAGCACTAGTAGTACTACAAAGGATGCTGTAACCAAAGTTCCAAGCAAGAAAAAGAATAATGGTTCAGATGAGGATCATTCTCCAACTCGCAGTCATGCTGGTGATAATGACCAAGCAGATGATGACGATGATGACGACGATGTTCAGTGGCAAACAGACACTTCTCTAGAGGCAGCCAAACAGCGTATCCAGGAGCAGCTGAGTGCTGTCACTGCTGATATGGTCATGCTCTCTACTACCGAAGAGAATAAGTCGTCAAAGAAGTCCCCCGAGCACGAGAAGTCTGCAGTCAATGGAACCAAGAATGGAAATGGAGTTTCTACCCATGGTGCCCTCGTTCAAGAGATCAAAGAGTATTTGAAGAAAGGTTCCTCTGCAGCCGATCTCAAATCATTCTTGGAATCACTTTCTGGAACTCGCCAAGAGATTGTGAATGCCTTAGTTGAGTCTCTGTTCGATGGCGTTGGGAAAGGCTTCTCAAAGGAGGTAGTGAAAAAGAAGAAGTTCCTAGCTGCAGCTGCCGCTCAGGAGGGATCACAGATAGTTCTTTTACGCGCCATCGAATCTTTCTGTCTGAACACAAGTCCAGAGGCGGGTAAGGAGGTTGCTCTAGTCCTGAAATCGTTATATGACGGTGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGCGTGGCTGGTGCTAACAAAAGCTCTCAAATCTGGAAGTATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCTGAGTCGGAGACGGAAGAAGAATAA 1341 44.59 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEVADEEQKKIKKDSLKKKSTSSTTKDAVTKVPSKKKNNGSDEDHSPTRSHAGDNDQADDDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSPEHEKSAVNGTKNGNGVSTHGALVQEIKEYLKKGSSAADLKSFLESLSGTRQEIVNALVESLFDGVGKGFSKEVVKKKKFLAAAAAQEGSQIVLLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23411267 23412607 - CrPI670011_08g010250.1 Cre08g1025 505943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1025 446 Pfam eIF4-gamma/eIF5/eIF2-epsilon 368 446 IPR003307 GO:0005515(InterPro)
Cre08g1025 446 Gene3D - 105 145 - -
Cre08g1025 446 SUPERFAMILY ARM repeat 299 440 IPR016024 -
Cre08g1025 446 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre08g1025 446 Gene3D - 2 104 - -
Cre08g1025 446 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Cre08g1025 446 MobiDBLite consensus disorder prediction 143 237 - -
Cre08g1025 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 442 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Cre08g1025 446 SMART 542_3 355 442 IPR003307 GO:0005515(InterPro)
Cre08g1025 446 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre08g1025 446 Gene3D - 294 437 - -
Cre08g1025 446 MobiDBLite consensus disorder prediction 148 190 - -
Cre08g1025 446 MobiDBLite consensus disorder prediction 199 225 - -
Cre08g1025 446 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre08g1025 446 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre08g1025 446 CDD W2_eIF5 295 444 - -
Cre08g1025 446 ProSiteProfiles W2 domain profile. 287 446 IPR003307 GO:0005515(InterPro)
Cre08g1025 446 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Cre08g1025 446 MobiDBLite consensus disorder prediction 268 295 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1025 K03262 - csv:101210873 739.954