Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1034 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCATGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCCTCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA 1098 50.0 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSFPDFSFSSSIQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23503288 23504385 + CrPI670011_08g010340.1 Cre08g1034 505952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1034 365 MobiDBLite consensus disorder prediction 304 347 - -
Cre08g1034 365 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 362 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre08g1034 365 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 SMART rav1_2 163 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677(InterPro)
Cre08g1034 365 CDD AP2 162 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 Gene3D AP2/ERF domain 163 221 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 MobiDBLite consensus disorder prediction 270 288 - -
Cre08g1034 365 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Cre08g1034 365 Pfam AP2 domain 163 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1034 365 MobiDBLite consensus disorder prediction 256 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1562 Cre-Chr6:10812133 Cre08g1034 Cre-Chr8:23503288 9.20E-29 dispersed
Cre07g1857 Cre-Chr7:33930339 Cre08g1034 Cre-Chr8:23503288 1.60E-33 dispersed
Cre08g1034 Cre-Chr8:23503288 Cre11g1954 Cre-Chr11:31358313 2.30E-92 dispersed
Cre04g1510 Cre-Chr4:33815584 Cre08g1034 Cre-Chr8:23503288 1.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54189 PF00847 AP2 4.90E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1034 K09286 - csv:101222833 577.015