Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1034 | ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCATGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCCTCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA | 1098 | 50.0 | MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSFPDFSFSSSIQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23503288 | 23504385 | + | CrPI670011_08g010340.1 | Cre08g1034 | 505952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1034 | 365 | MobiDBLite | consensus disorder prediction | 304 | 347 | - | - | |
Cre08g1034 | 365 | PRINTS | Ethylene responsive element binding protein signature | 186 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | PRINTS | Ethylene responsive element binding protein signature | 164 | 175 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 362 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cre08g1034 | 365 | ProSiteProfiles | AP2/ERF domain profile. | 163 | 220 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | SMART | rav1_2 | 163 | 226 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | SUPERFAMILY | DNA-binding domain | 163 | 221 | IPR016177 | GO:0003677(InterPro) | |
Cre08g1034 | 365 | CDD | AP2 | 162 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | Gene3D | AP2/ERF domain | 163 | 221 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | MobiDBLite | consensus disorder prediction | 270 | 288 | - | - | |
Cre08g1034 | 365 | FunFam | Ethylene-responsive transcription factor 2 | 162 | 221 | - | - | |
Cre08g1034 | 365 | Pfam | AP2 domain | 163 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g1034 | 365 | MobiDBLite | consensus disorder prediction | 256 | 347 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g1562 | Cre-Chr6:10812133 | Cre08g1034 | Cre-Chr8:23503288 | 9.20E-29 | dispersed | |
Cre07g1857 | Cre-Chr7:33930339 | Cre08g1034 | Cre-Chr8:23503288 | 1.60E-33 | dispersed | |
Cre08g1034 | Cre-Chr8:23503288 | Cre11g1954 | Cre-Chr11:31358313 | 2.30E-92 | dispersed | |
Cre04g1510 | Cre-Chr4:33815584 | Cre08g1034 | Cre-Chr8:23503288 | 1.00E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54189 | PF00847 | AP2 | 4.90E-15 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1034 | K09286 | - | csv:101222833 | 577.015 |