Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1061 ATGAGTTATTCCTCAATTAAAGAGCCATATCCCATAATGGCAGTAAATAAAGTGCAATTGCTGTATAATATCTGCAATGAAATTTTTTACGAAATCAAAGCTGAAGATGTTGGAATTGAGGAGTTGGAAGAGGCAGAATGTTCAAATATGAGCCCCAGAAGATTGATTTATGCTAAAGGAATTTCAGAAATAACTTACATCCATATCCATGAATGTGAATTCTTCTCTATTGGAATATTTTGTTTGCCTGCAGGGGGAGAGCTGCCATTACACGACCATCCAGGGATGACAGTGATGAGCAAGCTTCTTTATGGCTCTGTTCATGTAAAAGCTTATGATTGGATCAAAATGCAAAGCTCTTCTAATGGCCGAACGTTTGGTCTGGGGAAGAAGGTGATTGATAGGGTTTGGAGTGGAGGAAGTGAAGCAAGGGCTTTGTTTCCAAGAAGTGGAGGGAACATTCATTCATTTAGGGCAATCTCAGGGTGTGCCATTTTGGATGTCTTATCTCCACCATATTCACAACAACTTGGAAGACCTTCCACTTACTTCTCAGACTTCCCCATTCCCACTCTTCCCGATTGCTCCATGCTAGAAGAGATAAAGCAGCCAGATGATTTATACGTGGTTGGAGCACCTTATCTTGGCTCTTCAATAGTTACAAAAGGGGATGAAACTTATGCATATCATAAGTATTTTTAG 702 40.03 MSYSSIKEPYPIMAVNKVQLLYNICNEIFYEIKAEDVGIEELEEAECSNMSPRRLIYAKGISEITYIHIHECEFFSIGIFCLPAGGELPLHDHPGMTVMSKLLYGSVHVKAYDWIKMQSSSNGRTFGLGKKVIDRVWSGGSEARALFPRSGGNIHSFRAISGCAILDVLSPPYSQQLGRPSTYFSDFPIPTLPDCSMLEEIKQPDDLYVVGAPYLGSSIVTKGDETYAYHKYF 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23738406 23741369 - CrPI670011_08g010610.1 Cre08g1061 505979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1061 233 Gene3D Jelly Rolls 13 187 IPR014710 -
Cre08g1061 233 Pfam PCO_ADO 29 218 IPR012864 GO:0016702(InterPro)
Cre08g1061 233 CDD cupin_ADO 73 174 - -
Cre08g1061 233 SUPERFAMILY RmlC-like cupins 16 184 IPR011051 -
Cre08g1061 233 PANTHER UNCHARACTERIZED 22 217 IPR012864 GO:0016702(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1061 K23953 - - mdm:103436355 257.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1061 Cre-Chr8:23738406 Cre10g1628 Cre-Chr10:30375902 5.40E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g438 . Blo12g00711 Bda01g00892 . Bpe02g00117 Bpe04g00440 . Bma01g02606 Cmo05g00533 Cmo12g00128 . . . Car12g00153 Sed02g1797 . Cpe07g00141 Bhi04g00775 Tan02g2407 Cmetu08g1947 . Hepe10g0482 . Lcy13g1548 Cla08g01122 Cam08g1579 Cec08g1149 Cco08g1275 Clacu08g1280 . Cre08g1061 Cone4ag1326 Cone7ag1267 Cone17ag1207 Cone20ag0519 . . . Cme03g01853 . . Bda11g00774 Bda13g01395 Bpe02g01127 . Bma01g01398 Bma02g00134 . . . Cma12g00166 Cma05g00506 Car05g00456 . Cpe11g00446 . . . . . . . . . . . . . . . Lsi08g00978 Csa02g02162 Chy03g01355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015283 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 2 1 12