Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1072 ATGGCGGTTTCAATTAGCAGAAAACTTTTCCCTGTTGCCACTGGAACTACCCAACTCAACACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTCGACTGCTACGGTATTCCAGATTTCTACTTCCCACCGCCGCCTCTGCAGCCGCCGCCTCGTCTCTCCGACCACCAAAAACAGCTTCCAGTTATGACCATCGTCCTAATTCTGTTCGTCGCCTTTTTCTTCGCTTTTAGTTTCTACATCATCGTTGTAAAATGCCGATCTTGGCTCACTCGCTCCCGCAACCAAGGGGCAGAGGTGTTGCAATCGGACGTCGGAGAGGGAGAGTTTATGAACGAGAATCAAATCGATCATCCAATTTGGTTCATCACCACCGTTGGGCTTCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATCGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTAACTGATTTAGGTCCTGCGAATCAAAACGAAGCTAATTTGAGTGTAAATGAAGAAACCCAGATGGAGAATGAAGAGATTAATGGCCAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATGTTCAGATTGAGGAGACAATTCCAAAAGAAGGGAATAATTTTGAATCTGATGATTCTAAAGTTGAAGGAAATGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAACAACATGA 888 44.14 MAVSISRKLFPVATGTTQLNTNCSSCPYDCPFDCYGIPDFYFPPPPLQPPPRLSDHQKQLPVMTIVLILFVAFFFAFSFYIIVVKCRSWLTRSRNQGAEVLQSDVGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDLGPANQNEANLSVNEETQMENEEINGQVLVENEGVVSSGSSENRGDVVDEQREVGDVQIEETIPKEGNNFESDDSKVEGNESMRNNEMDSSSTT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23825654 23826541 + CrPI670011_08g010720.1 Cre08g1072 505990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1072 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Cre08g1072 295 Pfam Ring finger domain 152 195 IPR001841 -
Cre08g1072 295 FunFam RING-H2 finger protein ATL54 128 201 - -
Cre08g1072 295 PANTHER RING-H2 FINGER PROTEIN ATL16 44 285 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cre08g1072 295 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Cre08g1072 295 MobiDBLite consensus disorder prediction 237 295 - -
Cre08g1072 295 SUPERFAMILY RING/U-box 143 206 - -
Cre08g1072 295 CDD RING-H2_EL5-like 152 195 - -
Cre08g1072 295 SMART ring_2 153 194 IPR001841 -
Cre08g1072 295 MobiDBLite consensus disorder prediction 246 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1072 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0389 Cre-Chr5:3546671 Cre08g1072 Cre-Chr8:23825654 5.00E-34 dispersed
Cre07g0788 Cre-Chr7:6517695 Cre08g1072 Cre-Chr8:23825654 2.80E-13 dispersed
Cre08g1072 Cre-Chr8:23825654 Cre09g1125 Cre-Chr9:12010619 9.90E-38 dispersed
Cre08g1072 Cre-Chr8:23825654 Cre08g1074 Cre-Chr8:23864726 5.60E-17 proximal
Cre09g1612 Cre-Chr9:32949660 Cre08g1072 Cre-Chr8:23825654 3.50E-37 transposed
Cre11g1860 Cre-Chr11:30253030 Cre08g1072 Cre-Chr8:23825654 6.60E-15 wgd
Cre04g1472 Cre-Chr4:33499345 Cre08g1072 Cre-Chr8:23825654 5.10E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29