Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1073 ATGATGGCATTGGAAACTGTGGTATACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAACTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGAAGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAAGAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACTCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 44.76 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKLTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQELQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23834758 23836097 - CrPI670011_08g010730.1 Cre08g1073 505991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1073 311 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Cre08g1073 311 MobiDBLite consensus disorder prediction 75 96 - -
Cre08g1073 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983(InterPro)
Cre08g1073 311 MobiDBLite consensus disorder prediction 60 113 - -
Cre08g1073 311 PANTHER MAX DIMERIZATION, MAD 4 301 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g1073 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cre08g1073 311 Gene3D - 109 180 IPR036638 GO:0046983(InterPro)
Cre08g1073 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1073 Cre-Chr8:23834758 Cre02g0757 Cre-Chr2:4419432 2.10E-06 dispersed
Cre02g1915 Cre-Chr2:32499783 Cre08g1073 Cre-Chr8:23834758 9.80E-60 transposed
Cre03g1946 Cre-Chr3:36496959 Cre08g1073 Cre-Chr8:23834758 2.00E-47 transposed
Cre05g0062 Cre-Chr5:823121 Cre08g1073 Cre-Chr8:23834758 2.90E-39 transposed
Cre05g0426 Cre-Chr5:3850628 Cre08g1073 Cre-Chr8:23834758 7.20E-38 transposed
Cre05g0665 Cre-Chr5:5849738 Cre08g1073 Cre-Chr8:23834758 5.60E-15 transposed
Cre05g1058 Cre-Chr5:9833800 Cre08g1073 Cre-Chr8:23834758 4.50E-19 transposed
Cre09g1126 Cre-Chr9:12013702 Cre08g1073 Cre-Chr8:23834758 4.20E-47 transposed
Cre04g1425 Cre-Chr4:33064871 Cre08g1073 Cre-Chr8:23834758 7.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54191 PF00010 HLH 4.30E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1073 - - - 0.0