Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1088 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 747 51.14 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23971898 23972644 - CrPI670011_08g010880.1 Cre08g1088 506006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1088 248 MobiDBLite consensus disorder prediction 148 184 - -
Cre08g1088 248 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Cre08g1088 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cre08g1088 248 MobiDBLite consensus disorder prediction 20 51 - -
Cre08g1088 248 SUPERFAMILY Homeodomain-like 172 246 IPR009057 -
Cre08g1088 248 Gene3D - 172 246 - -
Cre08g1088 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cre08g1088 248 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cre08g1088 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 243 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre08g1088 248 MobiDBLite consensus disorder prediction 1 51 - -
Cre08g1088 248 FunFam Zinc-finger homeodomain protein 2 179 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0633 Cre-Chr1:5756127 Cre08g1088 Cre-Chr8:23971898 6.30E-18 dispersed
Cre01g1557 Cre-Chr1:28745342 Cre08g1088 Cre-Chr8:23971898 6.70E-18 dispersed
Cre04g1570 Cre-Chr4:34289540 Cre08g1088 Cre-Chr8:23971898 3.40E-42 dispersed
Cre08g1088 Cre-Chr8:23971898 Cre08g1446 Cre-Chr8:27390283 5.70E-47 dispersed
Cre04g1467 Cre-Chr4:33463153 Cre08g1088 Cre-Chr8:23971898 3.10E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54192 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1088 - - - 0.0