Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1088 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 747 51.14 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23971898 23972644 - CrPI670011_08g010880.1 Cre08g1088 506006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1088 248 MobiDBLite consensus disorder prediction 148 184 - -
Cre08g1088 248 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Cre08g1088 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cre08g1088 248 MobiDBLite consensus disorder prediction 20 51 - -
Cre08g1088 248 SUPERFAMILY Homeodomain-like 172 246 IPR009057 -
Cre08g1088 248 Gene3D - 172 246 - -
Cre08g1088 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cre08g1088 248 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cre08g1088 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 243 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre08g1088 248 MobiDBLite consensus disorder prediction 1 51 - -
Cre08g1088 248 FunFam Zinc-finger homeodomain protein 2 179 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0633 Cre-Chr1:5756127 Cre08g1088 Cre-Chr8:23971898 6.30E-18 dispersed
Cre01g1557 Cre-Chr1:28745342 Cre08g1088 Cre-Chr8:23971898 6.70E-18 dispersed
Cre04g1570 Cre-Chr4:34289540 Cre08g1088 Cre-Chr8:23971898 3.40E-42 dispersed
Cre08g1088 Cre-Chr8:23971898 Cre08g1446 Cre-Chr8:27390283 5.70E-47 dispersed
Cre04g1467 Cre-Chr4:33463153 Cre08g1088 Cre-Chr8:23971898 3.10E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54192 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cre TF