Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1092 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATGGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACGACGACGACGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGCGGCGACGGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACTCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTTACGACGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATAACAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1182 46.28 MMGPPPQTAAPSASAMVHVSAWDEKDSIPVRLATLRFDLAVSNLLCAEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDGDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIYDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSEATKRRRLNRPCEVEL 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24046681 24050544 - CrPI670011_08g010920.1 Cre08g1092 506010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1092 393 SMART cyclin_7 137 225 IPR013763 -
Cre08g1092 393 Pfam Cyclin, N-terminal domain 104 231 IPR006671 -
Cre08g1092 393 Gene3D - 115 232 - -
Cre08g1092 393 Gene3D - 104 313 - -
Cre08g1092 393 SUPERFAMILY Cyclin-like 96 231 IPR036915 -
Cre08g1092 393 CDD CYCLIN_AtCycD-like_rpt1 131 229 - -
Cre08g1092 393 MobiDBLite consensus disorder prediction 376 393 - -
Cre08g1092 393 PANTHER CYCLINS 104 301 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g1092 393 FunFam D2/4-type cyclin 115 230 - -
Cre08g1092 393 CDD CYCLIN_AtCycD-like_rpt2 234 322 - -
Cre08g1092 393 MobiDBLite consensus disorder prediction 367 393 - -
Cre08g1092 393 FunFam D6-type cyclin 231 320 - -
Cre08g1092 393 SMART Cyclin_C_2 234 359 IPR004367 -
Cre08g1092 393 SUPERFAMILY Cyclin-like 217 327 IPR036915 -
Cre08g1092 393 Pfam Cyclin, C-terminal domain 234 326 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1449 Cre-Chr2:26114397 Cre08g1092 Cre-Chr8:24046681 8.10E-30 dispersed
Cre05g2211 Cre-Chr5:33809489 Cre08g1092 Cre-Chr8:24046681 1.30E-33 dispersed
Cre08g1092 Cre-Chr8:24046681 Cre10g1170 Cre-Chr10:24034506 4.40E-49 dispersed
Cre05g2672 Cre-Chr5:37693389 Cre08g1092 Cre-Chr8:24046681 1.50E-44 transposed
Cre04g1374 Cre-Chr4:32582297 Cre08g1092 Cre-Chr8:24046681 3.80E-28 transposed
Cre04g1465 Cre-Chr4:33446872 Cre08g1092 Cre-Chr8:24046681 5.40E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1092 K18810 - csv:101216206 609.757