Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1094 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGACTGGAATTCGATACAATGGAGTCGACAACGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCAGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTGTAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTTTATGCATGGGTCCCCGGCTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGCAGCAAGATAGACATAGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTGTGGGAAATTGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAATACGGCCTGTGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACTGTTGGTGTCAGCGACTACACTAAGGATTGGTTCTTCGCTCAGGTCACTAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACTTACAAGCTTCGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTGCAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGAGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGCCCTTTTCAAGCCATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA 1926 48.86 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFVSAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSKIDIDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLRVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24072451 24078907 + CrPI670011_08g010940.1 Cre08g1094 506012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1094 641 CDD RGL4_N 8 293 - -
Cre08g1094 641 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cre08g1094 641 Gene3D - 439 629 - -
Cre08g1094 641 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre08g1094 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cre08g1094 641 Gene3D - 329 429 - -
Cre08g1094 641 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Cre08g1094 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Cre08g1094 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cre08g1094 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cre08g1094 641 CDD RGL4_M 332 431 IPR029413 -
Cre08g1094 641 Gene3D - 5 301 IPR014718 GO:0030246(InterPro)
Cre08g1094 641 CDD RGL4_C 443 629 - -
Cre08g1094 641 SUPERFAMILY Starch-binding domain-like 330 431 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1094 Cre-Chr8:24072451 Cre11g1890 Cre-Chr11:30650641 1.20E-282 dispersed
Cre04g1806 Cre-Chr4:35926737 Cre08g1094 Cre-Chr8:24072451 4.20E-203 transposed
Cre11g1889 Cre-Chr11:30627723 Cre08g1094 Cre-Chr8:24072451 4.70E-265 wgd
Cre04g1443 Cre-Chr4:33256604 Cre08g1094 Cre-Chr8:24072451 2.80E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1094 K18195 - csv:101215720 1246.88