Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1099 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCAGCCGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAATAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAATAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1068 48.31 MAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPNKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24158058 24164643 - CrPI670011_08g010990.1 Cre08g1099 506017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1099 355 ProSiteProfiles GATA-type zinc finger domain profile. 201 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 MobiDBLite consensus disorder prediction 24 48 - -
Cre08g1099 355 Pfam tify domain 71 102 IPR010399 -
Cre08g1099 355 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515(InterPro)
Cre08g1099 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Cre08g1099 355 MobiDBLite consensus disorder prediction 277 355 - -
Cre08g1099 355 CDD ZnF_GATA 206 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 SMART GATA_3 201 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 SMART tify_2 68 103 IPR010399 -
Cre08g1099 355 PANTHER GATA TRANSCRIPTION FACTOR 28 16 295 IPR045280 GO:0006355(InterPro)
Cre08g1099 355 Gene3D - 199 257 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1099 355 Pfam CCT motif 136 177 IPR010402 GO:0005515(InterPro)
Cre08g1099 355 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Cre08g1099 355 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1099 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1099 Cre-Chr8:24158058 Cre09g0151 Cre-Chr9:1749108 1.80E-54 dispersed
Cre08g1099 Cre-Chr8:24158058 Cre08g1100 Cre-Chr8:24167984 5.70E-48 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre06g1398 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54193 PF06203 CCT 1.30E-13 CL0281 Cre TF