Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1099 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGTGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCAGCCGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAATAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAATAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1068 48.31 MAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPNKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24158058 24164643 - CrPI670011_08g010990.1 Cre08g1099 506017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1099 355 ProSiteProfiles GATA-type zinc finger domain profile. 201 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 MobiDBLite consensus disorder prediction 24 48 - -
Cre08g1099 355 Pfam tify domain 71 102 IPR010399 -
Cre08g1099 355 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515(InterPro)
Cre08g1099 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Cre08g1099 355 MobiDBLite consensus disorder prediction 277 355 - -
Cre08g1099 355 CDD ZnF_GATA 206 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 SMART GATA_3 201 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1099 355 SMART tify_2 68 103 IPR010399 -
Cre08g1099 355 PANTHER GATA TRANSCRIPTION FACTOR 28 16 295 IPR045280 GO:0006355(InterPro)
Cre08g1099 355 Gene3D - 199 257 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1099 355 Pfam CCT motif 136 177 IPR010402 GO:0005515(InterPro)
Cre08g1099 355 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Cre08g1099 355 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1099 Cre-Chr8:24158058 Cre09g0151 Cre-Chr9:1749108 1.80E-54 dispersed
Cre08g1099 Cre-Chr8:24158058 Cre08g1100 Cre-Chr8:24167984 5.70E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54193 PF06203 CCT 1.30E-13 CL0281 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1099 - - - 0.0