Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1100 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGGCAAATATGGGTAGTGGCACGAAGTTCTGGTATGCCGACGTGTGTAGACCTGTATTGCACAGGCAGACCGGGACGAACTCAGACGACTATCAATGGGAGAGGAATCGACAACATAGCTGGGCGCGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTTTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTGTATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCCGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAATTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAACGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 1422 49.37 MKLFSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRQIWVVARSSGMPTCVDLYCTGRPGRTQTTINGRGIDNIAGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHFHNLLLSSHLPPFSFARLRFSSVYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGRVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRIQDHPVTPAEQCESDGGNDCRHGNHAPSNLVSFSNGDNSALMAEH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24167984 24184737 - CrPI670011_08g011000.1 Cre08g1100 506018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1100 473 MobiDBLite consensus disorder prediction 434 473 - -
Cre08g1100 473 SMART GATA_3 379 432 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 ProSitePatterns GATA-type zinc finger domain. 385 412 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 453 467 - -
Cre08g1100 473 ProSiteProfiles GATA-type zinc finger domain profile. 379 438 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 Gene3D - 375 433 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1100 473 ProSiteProfiles Tify domain profile. 250 285 IPR010399 -
Cre08g1100 473 Pfam CCT motif 317 359 IPR010402 GO:0005515(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 350 387 - -
Cre08g1100 473 MobiDBLite consensus disorder prediction 306 321 - -
Cre08g1100 473 CDD ZnF_GATA 384 428 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 350 365 - -
Cre08g1100 473 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515(InterPro)
Cre08g1100 473 SMART tify_2 250 285 IPR010399 -
Cre08g1100 473 MobiDBLite consensus disorder prediction 306 325 - -
Cre08g1100 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 379 427 - -
Cre08g1100 473 PANTHER GATA TRANSCRIPTION FACTOR 28 229 466 IPR045280 GO:0006355(InterPro)
Cre08g1100 473 Pfam tify domain 253 284 IPR010399 -
Cre08g1100 473 Pfam GATA zinc finger 385 421 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1100 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0816 Cre-Chr1:9273684 Cre08g1100 Cre-Chr8:24167984 2.30E-61 dispersed
Cre08g1100 Cre-Chr8:24167984 Cre09g0151 Cre-Chr9:1749108 3.30E-51 dispersed
Cre08g1099 Cre-Chr8:24158058 Cre08g1100 Cre-Chr8:24167984 5.70E-48 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre06g1398 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54194 PF06203 CCT 1.40E-14 CL0281 Cre TF