Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1100 ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGGCAAATATGGGTAGTGGCACGAAGTTCTGGTATGCCGACGTGTGTAGACCTGTATTGCACAGGCAGACCGGGACGAACTCAGACGACTATCAATGGGAGAGGAATCGACAACATAGCTGGGCGCGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTTTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTGTATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCCGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAATTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAACGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 1422 49.37 MKLFSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRQIWVVARSSGMPTCVDLYCTGRPGRTQTTINGRGIDNIAGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHFHNLLLSSHLPPFSFARLRFSSVYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGRVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRIQDHPVTPAEQCESDGGNDCRHGNHAPSNLVSFSNGDNSALMAEH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24167984 24184737 - CrPI670011_08g011000.1 Cre08g1100 506018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1100 473 MobiDBLite consensus disorder prediction 434 473 - -
Cre08g1100 473 SMART GATA_3 379 432 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 ProSitePatterns GATA-type zinc finger domain. 385 412 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 453 467 - -
Cre08g1100 473 ProSiteProfiles GATA-type zinc finger domain profile. 379 438 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 Gene3D - 375 433 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre08g1100 473 ProSiteProfiles Tify domain profile. 250 285 IPR010399 -
Cre08g1100 473 Pfam CCT motif 317 359 IPR010402 GO:0005515(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 350 387 - -
Cre08g1100 473 MobiDBLite consensus disorder prediction 306 321 - -
Cre08g1100 473 CDD ZnF_GATA 384 428 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre08g1100 473 MobiDBLite consensus disorder prediction 350 365 - -
Cre08g1100 473 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515(InterPro)
Cre08g1100 473 SMART tify_2 250 285 IPR010399 -
Cre08g1100 473 MobiDBLite consensus disorder prediction 306 325 - -
Cre08g1100 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 379 427 - -
Cre08g1100 473 PANTHER GATA TRANSCRIPTION FACTOR 28 229 466 IPR045280 GO:0006355(InterPro)
Cre08g1100 473 Pfam tify domain 253 284 IPR010399 -
Cre08g1100 473 Pfam GATA zinc finger 385 421 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0816 Cre-Chr1:9273684 Cre08g1100 Cre-Chr8:24167984 2.30E-61 dispersed
Cre08g1100 Cre-Chr8:24167984 Cre09g0151 Cre-Chr9:1749108 3.30E-51 dispersed
Cre08g1099 Cre-Chr8:24158058 Cre08g1100 Cre-Chr8:24167984 5.70E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54194 PF06203 CCT 1.40E-14 CL0281 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1100 - - - 0.0