Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1100 | ATGAAACTTTTCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGGCAAATATGGGTAGTGGCACGAAGTTCTGGTATGCCGACGTGTGTAGACCTGTATTGCACAGGCAGACCGGGACGAACTCAGACGACTATCAATGGGAGAGGAATCGACAACATAGCTGGGCGCGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTTTCACAACCTTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTGTATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCACAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCCGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAATTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAACGACTGCAGACATGGTAACCATGCGCCTAGCAATCTGGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG | 1422 | 49.37 | MKLFSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRQIWVVARSSGMPTCVDLYCTGRPGRTQTTINGRGIDNIAGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHFHNLLLSSHLPPFSFARLRFSSVYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGRVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRIQDHPVTPAEQCESDGGNDCRHGNHAPSNLVSFSNGDNSALMAEH | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24167984 | 24184737 | - | CrPI670011_08g011000.1 | Cre08g1100 | 506018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 434 | 473 | - | - | |
Cre08g1100 | 473 | SMART | GATA_3 | 379 | 432 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1100 | 473 | ProSitePatterns | GATA-type zinc finger domain. | 385 | 412 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 453 | 467 | - | - | |
Cre08g1100 | 473 | ProSiteProfiles | GATA-type zinc finger domain profile. | 379 | 438 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1100 | 473 | Gene3D | - | 375 | 433 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cre08g1100 | 473 | ProSiteProfiles | Tify domain profile. | 250 | 285 | IPR010399 | - | |
Cre08g1100 | 473 | Pfam | CCT motif | 317 | 359 | IPR010402 | GO:0005515(InterPro) | |
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 350 | 387 | - | - | |
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 306 | 321 | - | - | |
Cre08g1100 | 473 | CDD | ZnF_GATA | 384 | 428 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 350 | 365 | - | - | |
Cre08g1100 | 473 | ProSiteProfiles | CCT domain profile. | 317 | 359 | IPR010402 | GO:0005515(InterPro) | |
Cre08g1100 | 473 | SMART | tify_2 | 250 | 285 | IPR010399 | - | |
Cre08g1100 | 473 | MobiDBLite | consensus disorder prediction | 306 | 325 | - | - | |
Cre08g1100 | 473 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 379 | 427 | - | - | |
Cre08g1100 | 473 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 229 | 466 | IPR045280 | GO:0006355(InterPro) | |
Cre08g1100 | 473 | Pfam | tify domain | 253 | 284 | IPR010399 | - | |
Cre08g1100 | 473 | Pfam | GATA zinc finger | 385 | 421 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0816 | Cre-Chr1:9273684 | Cre08g1100 | Cre-Chr8:24167984 | 2.30E-61 | dispersed | |
Cre08g1100 | Cre-Chr8:24167984 | Cre09g0151 | Cre-Chr9:1749108 | 3.30E-51 | dispersed | |
Cre08g1099 | Cre-Chr8:24158058 | Cre08g1100 | Cre-Chr8:24167984 | 5.70E-48 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54194 | PF06203 | CCT | 1.40E-14 | CL0281 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1100 | - | - | - | 0.0 |