Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1108 ATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTCTACATGTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGTCTTCAGCTCTTCCGGAGTGTAAGTCGACCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCGGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTCGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTGGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACTCCCATTCGCACTGTTCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCGAAACAAGAGGCAGTCTCAACGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAAATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCATAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCCTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGACCTCTGCATCGCCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCAACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 1989 43.44 MVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRLHVVTIVPSSHGLRHDPVSLQLFRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSTSGTKAPDTAGSTSNLASNEIKGEKKDVIGMNSKDNMPRGTPPKRSPSASSPSSEKADIPSSSSQNKQDGEKTSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24243536 24248776 + CrPI670011_08g011080.1 Cre08g1108 506026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1108 662 Gene3D - 298 353 IPR023408 -
Cre08g1108 662 Gene3D - 194 296 - -
Cre08g1108 662 MobiDBLite consensus disorder prediction 518 538 - -
Cre08g1108 662 MobiDBLite consensus disorder prediction 562 594 - -
Cre08g1108 662 MobiDBLite consensus disorder prediction 486 662 - -
Cre08g1108 662 MobiDBLite consensus disorder prediction 618 632 - -
Cre08g1108 662 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cre08g1108 662 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre08g1108 662 MobiDBLite consensus disorder prediction 491 517 - -
Cre08g1108 662 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 649 IPR045042 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1108 Cre-Chr8:24243536 Cre10g0936 Cre-Chr10:12310075 1.10E-188 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1108 K22047 - csv:101213477 1202.58