Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1110 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAGCTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGCAACCTTGGAAAGTTGGAATATCCATCCCTTGAGTTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGTGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGGCCTCCTTGCGCAAATTGA 693 47.33 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSSSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVVAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGPPCAN 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24270314 24277278 - CrPI670011_08g011100.1 Cre08g1110 506028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1110 230 MobiDBLite consensus disorder prediction 201 230 - -
Cre08g1110 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre08g1110 230 Coils Coil 81 115 - -
Cre08g1110 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g1110 230 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g1110 230 MobiDBLite consensus disorder prediction 201 216 - -
Cre08g1110 230 Coils Coil 151 178 - -
Cre08g1110 230 FunFam Transcription factor, MADS-box 13 83 - -
Cre08g1110 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g1110 230 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g1110 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1110 Cre-Chr8:24270314 Cre10g1125 Cre-Chr10:23271488 1.30E-45 dispersed
Cre10g1145 Cre-Chr10:23605955 Cre08g1110 Cre-Chr8:24270314 9.40E-06 dispersed
Cre11g1893 Cre-Chr11:30683115 Cre08g1110 Cre-Chr8:24270314 4.50E-06 dispersed
Cre11g1892 Cre-Chr11:30673026 Cre08g1110 Cre-Chr8:24270314 3.50E-17 wgd
Cre04g1442 Cre-Chr4:33243334 Cre08g1110 Cre-Chr8:24270314 5.20E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54196 PF01486 K-box 2.00E-15 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1110 - - - 0.0