Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1113 ATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCGAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA 834 57.55 MLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24321814 24322647 + CrPI670011_08g011130.1 Cre08g1113 506031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1113 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 205 - -
Cre08g1113 277 FunFam AT-hook motif nuclear-localized protein 80 212 - -
Cre08g1113 277 MobiDBLite consensus disorder prediction 230 244 - -
Cre08g1113 277 MobiDBLite consensus disorder prediction 208 244 - -
Cre08g1113 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 194 IPR005175 -
Cre08g1113 277 CDD DUF296 80 193 IPR005175 -
Cre08g1113 277 PIRSF ESCAROLA 2 276 IPR014476 GO:0003680(InterPro)
Cre08g1113 277 Gene3D - 79 211 - -
Cre08g1113 277 ProSiteProfiles PPC domain profile profile. 76 214 IPR005175 -
Cre08g1113 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 245 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre08g1113 277 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1491 Cre-Chr3:29224614 Cre08g1113 Cre-Chr8:24321814 2.30E-36 dispersed
Cre08g1113 Cre-Chr8:24321814 Cre09g2174 Cre-Chr9:40811400 4.60E-45 dispersed
Cre11g1874 Cre-Chr11:30408104 Cre08g1113 Cre-Chr8:24321814 6.40E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1113 - - - 0.0