Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1113 | ATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCGAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA | 834 | 57.55 | MLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24321814 | 24322647 | + | CrPI670011_08g011130.1 | Cre08g1113 | 506031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1113 | 277 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 78 | 205 | - | - | |
Cre08g1113 | 277 | FunFam | AT-hook motif nuclear-localized protein | 80 | 212 | - | - | |
Cre08g1113 | 277 | MobiDBLite | consensus disorder prediction | 230 | 244 | - | - | |
Cre08g1113 | 277 | MobiDBLite | consensus disorder prediction | 208 | 244 | - | - | |
Cre08g1113 | 277 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 80 | 194 | IPR005175 | - | |
Cre08g1113 | 277 | CDD | DUF296 | 80 | 193 | IPR005175 | - | |
Cre08g1113 | 277 | PIRSF | ESCAROLA | 2 | 276 | IPR014476 | GO:0003680(InterPro) | |
Cre08g1113 | 277 | Gene3D | - | 79 | 211 | - | - | |
Cre08g1113 | 277 | ProSiteProfiles | PPC domain profile profile. | 76 | 214 | IPR005175 | - | |
Cre08g1113 | 277 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 36 | 245 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre08g1113 | 277 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1491 | Cre-Chr3:29224614 | Cre08g1113 | Cre-Chr8:24321814 | 2.30E-36 | dispersed | |
Cre08g1113 | Cre-Chr8:24321814 | Cre09g2174 | Cre-Chr9:40811400 | 4.60E-45 | dispersed | |
Cre11g1874 | Cre-Chr11:30408104 | Cre08g1113 | Cre-Chr8:24321814 | 6.40E-82 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1113 | - | - | - | 0.0 |