Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1128 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTGAGTGAAGCTGAATCTAGGAAGTACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTCGACTCCCTAGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCTCGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAACCGATGCCTCGCCATTCTTTTGCTAAATAGAGAAGTAACAATGGCATTGTCGTGGTATTTGTCCGAAGCCCAATATCAGCTGGTTATTCTCCTGATCTTACTTATAGAAATTAGTTTCATATGA 1452 42.49 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGLDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKNRCLAILLLNREVTMALSWYLSEAQYQLVILLILLIEISFI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24453921 24459821 - CrPI670011_08g011280.1 Cre08g1128 506046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1128 483 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Cre08g1128 483 FunFam Non-specific serine/threonine protein kinase 2 302 - -
Cre08g1128 483 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Cre08g1128 483 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1128 483 Gene3D Kinase associated domain 1, KA1 306 428 - -
Cre08g1128 483 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Cre08g1128 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1128 483 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Cre08g1128 483 CDD CIPK_C 309 424 - -
Cre08g1128 483 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Cre08g1128 483 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Cre08g1128 483 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Cre08g1128 483 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1128 483 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1128 483 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1802 Cre-Chr5:30026753 Cre08g1128 Cre-Chr8:24453921 1.30E-105 dispersed
Cre06g0821 Cre-Chr6:1522910 Cre08g1128 Cre-Chr8:24453921 3.40E-70 dispersed
Cre06g1180 Cre-Chr6:5647520 Cre08g1128 Cre-Chr8:24453921 1.60E-82 dispersed
Cre08g1128 Cre-Chr8:24453921 Cre10g1444 Cre-Chr10:28245196 4.80E-98 dispersed
Cre11g0718 Cre-Chr11:4308071 Cre08g1128 Cre-Chr8:24453921 3.80E-13 dispersed
Cre06g1984 Cre-Chr6:27287585 Cre08g1128 Cre-Chr8:24453921 2.90E-170 transposed
Cre04g1478 Cre-Chr4:33577679 Cre08g1128 Cre-Chr8:24453921 1.80E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64343 PF00069 Pkinase 3.20E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1128 - - - 0.0